Pkg.test("Cairo") fails for me #148

ranjanan · 2016-06-27T23:45:37Z

Since build is passing, I must be doing something wrong. Help please!

julia> Pkg.test("Cairo")
INFO: Testing Cairo
ERROR: LoadError: UndefVarError: _jl_libcairo not defined
 in CairoImageSurface(::Int64, ::Int64, ::Int32) at /Users/ranjan/.julia/v0.5/Cairo/src/Cairo.jl:168
 in include_from_node1(::String) at ./loading.jl:426
 in process_options(::Base.JLOptions) at ./client.jl:266
 in _start() at ./client.jl:322
while loading /Users/ranjan/.julia/v0.5/Cairo/test/runtests.jl, in expression starting on line 6
==============================================================[ ERROR: Cairo ]===============================================================

failed process: Process(`/Users/ranjan/julia/usr/bin/julia -Cnative -J/Users/ranjan/julia/usr/lib/julia/sys.dylib --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes /Users/ranjan/.julia/v0.5/Cairo/test/runtests.jl`, ProcessExited(1)) [1]

=============================================================================================================================================
ERROR: Cairo had test errors
 in #test#49(::Bool, ::Function, ::Array{AbstractString,1}) at ./pkg/entry.jl:694
 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at ./null:0
 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at ./pkg/dir.jl:31
 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at ./file.jl:59
 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./pkg/dir.jl:31
 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./null:0
 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at ./pkg/pkg.jl:255
 in test(::String, ::Vararg{String,N}) at ./pkg/pkg.jl:255
 in eval(::Module, ::Any) at ./boot.jl:234
 in macro expansion at ./REPL.jl:92 [inlined]
 in (::Base.REPL.##1#2{Base.REPL.REPLBackend})() at ./event.jl:46

versioninfo():

julia> versioninfo()
Julia Version 0.5.0-dev+4956
Commit 861100c* (2016-06-27 16:47 UTC)
Platform Info:
  System: Darwin (x86_64-apple-darwin15.4.0)
  CPU: Intel(R) Core(TM) i5-5257U CPU @ 2.70GHz
  WORD_SIZE: 64
  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Haswell)
  LAPACK: libopenblas64_
  LIBM: libopenlibm
  LLVM: libLLVM-3.7.1 (ORCJIT, broadwell)

The text was updated successfully, but these errors were encountered:

rsrock · 2016-08-10T20:13:56Z

I just ran into this myself. A Pkg.build("Cairo") fixed it.

colbec · 2016-08-27T09:48:11Z

I also have the problem "ERROR: LoadError: UndefVarError: _jl_libcairo not defined". OP reports from Mac, I am on Linux. I have done Pkg.checkout("Cairo") followed by Pkg.build("Cairo"), but no difference. The suggestion in #149 to remove Cairo installed in my system would be severe requiring ~600 other applications to be removed.

I believe this issue may be responsible for the failure to test of ImageView which @timholy tried to help me with in julia-users.

Using:

julia> versioninfo()
Julia Version 0.6.0-dev.416
Commit c20a8bc* (2016-08-27 06:57 UTC)
Platform Info:
  System: Linux (x86_64-suse-linux)
  CPU: Intel(R) Core(TM) i5-4460  CPU @ 3.20GHz
  WORD_SIZE: 64
  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Haswell)
  LAPACK: libopenblas64_
  LIBM: libopenlibm
  LLVM: libLLVM-3.7.1 (ORCJIT, haswell)

tkelman · 2016-08-27T10:18:30Z

Is there a file at Pkg.dir("Cairo","deps","deps.jl") ? If so, what does it say?

colbec · 2016-08-27T10:49:25Z

File /home/colin/.julia/v0.6/Cairo/deps/deps.jl says:

# This is an auto-generated file; do not edit

# Pre-hooks

# Macro to load a library
macro checked_lib(libname, path)
    ((VERSION >= v"0.4.0-dev+3844" ? Base.Libdl.dlopen_e : Base.dlopen_e)(path)
    quote const $(esc(libname)) = $path end
end

# Load dependencies

# Load-hooks

I have been checking file Cairo/deps/build.jl, and note that section "System Package Managers" contains a reference to Zypper, but previous experience has indicated that the earlier reference to an existing but truncated AptGet might get preference on my system. If I were to move the Zypper entry to precede the AptGet would that ensure that AptGet entry would be ignored?

I have also been checking the format of the deps aliases for minor differences but all looks ok so far.

timholy · 2016-08-27T11:01:25Z

For comparison, on mine the crucial section looks like this:

# Load dependencies
@checked_lib _jl_libgobject "/usr/lib/x86_64-linux-gnu/libgobject-2.0.so.0"
@checked_lib _jl_libpango "/usr/lib/x86_64-linux-gnu/libpango-1.0.so.0"
@checked_lib _jl_libpangocairo "/usr/lib/x86_64-linux-gnu/libpangocairo-1.0.so.0"
@checked_lib _jl_libcairo "/usr/lib/x86_64-linux-gnu/libcairo.so.2"

tkelman · 2016-08-27T11:11:21Z

What is BinDeps.has_apt ? ref JuliaPackaging/BinDeps.jl@89d4d8d

colbec · 2016-08-27T11:15:23Z

julia> using BinDeps

julia> BinDeps.has_apt
false

Edit: as a side note, calling apt-get -v simply as a test triggers the odd appearance of the openSUSE package manager GUI, which is such a curious oddity on openSUSE.

tkelman · 2016-08-27T11:20:01Z

Okay then that old issue with BinDeps thinking opensuse has apt-get should be resolved. If you comment out

Cairo.jl/deps/build.jl

Lines 75 to 84 in 18c5638

    
           provides(Zypper, 
        
               @compat Dict( 
        
                   "libcairo" => cairo, 
        
                   "libfontconfig" => fontconfig, 
        
                   "libpango-1.0" => [pango,pangocairo], 
        
                   "libglib-2.0" => gobject, 
        
                   "libpng12" => libpng, 
        
                   "libpixman-1" => pixman, 
        
                   "gettext" => gettext 
        
               ))

and do Pkg.build("Cairo"), it should build a local copy from source.

colbec · 2016-08-27T11:50:39Z

OK so did the following:
Commented out the Zypper section as instructed.
Pkg.rm("Cairo") twice, Pkg.add("Cairo"), Pkg.build("Cairo") => build successful but test still fails as above.
Did rm(Pkg.dir("Cairo","deps","usr"); recursive=true) and rm(Pkg.dir("Cairo","deps","src"); recursive=true) then rebuild but again build successful but tests fail same error.
File /home/colin/.julia/v0.6/Cairo/deps/deps.jl no change from above.

tkelman · 2016-08-27T11:56:22Z

I did not say to Pkg.rm. That probably removed the modifications to the build script.

colbec · 2016-08-27T12:15:37Z

Oh dear then that is very strange. I go back to my cached Cairo files and find that the modifications I made are still in place. I will start again.

colbec · 2016-08-27T12:51:36Z

Nope, can't seem to get it. Wiped all traces of Cairo from julia and added it back, . Modified the build.jl file and rebuilt. Still the same error. Changed from block comment to series of single line comments to see if I had the block comment wrong but no I had it right (and build complained once when I had the syntax wrong, so we are looking at the same file), build is fine (and goes very quickly) but test still not cooperating.

tkelman · 2016-08-27T13:02:51Z

alright then it sounds like this requires trying to debug why bindeps isn't writing any results. I don't have many great suggestions for how to go about that other than adding a bunch of @show calls in various different BinDeps functions.

colbec · 2016-08-27T15:17:41Z

@tkelman I found the output from the BinDeps.debug("Cairo") quite interesting.
It may not be writing anything because it is satisfied from the system sources?

julia> BinDeps.debug("Cairo")
INFO: Reading build script...
The package declares 1 dependencies.
 - Library Group "cairo"
     - Library "png" (not applicable to this system)
     - Library "pixman" (not applicable to this system)
     - Library "ffi" (not applicable to this system)
     - Library "gettext"
        - Satisfied by:
          - Autotools Build at /home/colin/.julia/v0.6/Cairo/deps/usr/lib64/preloadable_libintl.so
          - Autotools Build at /home/colin/.julia/v0.6/Cairo/deps/usr/lib64/libgettextpo.so
        - Providers:
          - BinDeps.AptGet package gettext (can't provide)
          - BinDeps.Yum package gettext-libs (can't provide)
          - Autotools Build
     - Library "gobject"
        - Satisfied by:
          - System Paths at /usr/lib64/libgobject-2.0.so
        - Providers:
          - BinDeps.AptGet package libglib2.0-0 (can't provide)
          - BinDeps.Yum package glib2 (can't provide)
          - Autotools Build
     - Library "freetype" (not applicable to this system)
     - Library "fontconfig" (not applicable to this system)
     - Library "cairo"
        - Satisfied by:
          - Autotools Build at /home/colin/.julia/v0.6/Cairo/deps/usr/lib64/libcairo.so
          - Autotools Build at /home/colin/.julia/v0.6/Cairo/deps/usr/lib64/libcairo.so.2
          - System Paths at /usr/lib64/libcairo.so
        - Providers:
          - BinDeps.AptGet package libcairo2 (can't provide)
          - BinDeps.Yum package cairo (can't provide)
          - Autotools Build
     - Library "pango"
        - Satisfied by:
          - System Paths at /usr/lib64/libpango-1.0.so
        - Providers:
          - BinDeps.AptGet package libpango1.0-0 (can't provide)
          - BinDeps.Yum package pango (can't provide)
          - Autotools Build
     - Library "pangocairo"
        - Satisfied by:
          - System Paths at /usr/lib64/libpangocairo-1.0.so
        - Providers:
          - BinDeps.AptGet package libpango1.0-0 (can't provide)
          - BinDeps.Yum package pango (can't provide)
          - Autotools Build
     - Library "zlib" (not applicable to this system)

tkelman · 2016-08-27T15:31:36Z

Since they're part of a library group, they're supposed to all be provided from the same provider category.

micahjsmith · 2016-09-28T00:01:38Z

+1 This was still an issue for me today.

The solution was to brew uninstall -f cairo, Pkg.add("Cairo"), brew install cairo.

julia> versioninfo()
Julia Version 0.5.0
Commit 3c9d753* (2016-09-19 18:14 UTC)
Platform Info:
  System: Darwin (x86_64-apple-darwin15.6.0)
  CPU: Intel(R) Core(TM) i5-4570S CPU @ 2.90GHz
  WORD_SIZE: 64
  BLAS: libopenblas (DYNAMIC_ARCH NO_AFFINITY Haswell)
  LAPACK: libopenblas
  LIBM: libopenlibm
  LLVM: libLLVM-3.7.1 (ORCJIT, haswell)

ranjanan mentioned this issue Jun 30, 2016

Update README with install note #149

Closed

bicycle1885 mentioned this issue Sep 6, 2016

[release-0.5] Backports for 0.5.0-rc4 JuliaLang/julia#18276

Merged

lobingera mentioned this issue Oct 13, 2016

error in all plots GiovineItalia/Gadfly.jl#916

Closed

giordano mentioned this issue Sep 2, 2019

Use BinaryProvider to install Cairo and Pango #292

Merged

tknopp closed this as completed in #292 Sep 6, 2019

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Pkg.test("Cairo") fails for me #148

Pkg.test("Cairo") fails for me #148

ranjanan commented Jun 27, 2016 •

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micahjsmith commented Sep 28, 2016

Pkg.test("Cairo") fails for me #148

Pkg.test("Cairo") fails for me #148

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