BATCH.md

Optional batch processing version:

Perform a batch conversion of multiple dicoms using the configurations specified in a yaml file.

dcm2niibatch batch_config.yml

The configuration file should be in yaml format as shown in example batch_config.yaml

Options:
  isGz:             false
  isFlipY:          false
  isVerbose:        false
  isCreateBIDS:     false
  isOnlySingleFile: false
Files:
    -
      in_dir:           /path/to/first/folder
      out_dir:          /path/to/output/folder
      filename:         dcemri
    -
      in_dir:           /path/to/second/folder
      out_dir:          /path/to/output/folder
      filename:         fa3

You can add as many files as you want to convert as long as this structure stays consistent. Note that a dash must separate each file.