A repository for the analysis of various RADx data dictionaries. The repo contains a folder called "curated" that contains a collection of cleaned data dictionaries by Data Collection Center (DCC). To process the data dictionaries run the "process-data-dictionaries.sh" script. The processing will produce a series of folders containing intermediate processed data dictionaries and then a merge of all data dictionaries in a file called merged.csv.
Open a terminal with the working directory set to the directory where you would like to clone the repo. Type,
git clone https://github.com/RADx/radx-data-dictionary-analysis.git
Next, switch to the cloned repo directory, radx-data-dictionary-analysis directory,
cd radx-data-dictionary-analysis
Next run the script (see note below),
./process-data-dictionaries.sh ./curated ./generated
This will output processing files in the generated directory.
This script requires the RADx Data Dictionary Explorer command line tool. The script uses an alias dd to this tool. You should build and install the tool and then set up an alias to the tool.