-
Notifications
You must be signed in to change notification settings - Fork 0
/
flexpart_makefile
414 lines (375 loc) · 15.4 KB
/
flexpart_makefile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
SHELL = /bin/bash
################################################################################
# DESCRIPTION
# Makefile for FLEXPART. Standard (serial) and parallel (MPI) version
#
# Dependencies are resolved in this makefile, so parallel make is
# possible ("make -j")
#
# At NILU we have installed gcc-4.9.1 and libraries under user /homevip/flexpart
# ("ROOT_DIR")
# To use gfortran version 4.9, add "gcc=4.9" to the make command, e.g.
# 'make -j ecmwf gcc=4.9',
# also set environment variable LD_LIBRARY_PATH to point to compiler libraries
#
# Makefile was modified to produce unified executable for both ECMWF and GFS meteo data formats
# gributils were included to detect format of meteo data
#
# Cpp directives USE_MPIINPLACE were added to three source files. The effect of these directives
# are to enable the MPI_IN_PLACE option only if compiled with a -DUSE_MPIINPLACE directive.
# Otherwise, a safer option (which requires the allocation of another array) is used by default.
# In makefile added the -x f95-cpp-input flag for compiling of cpp directives.
#
# USAGE
# Compile serial FLEXPART
# make [-j] serial
#
# Compile parallel FLEXPART
# make [-j] mpi
#
# Compile for debugging parallel FLEXPART
# make [-j] mpi-dbg
#
# NETCDF OUTPUT
# To add support for output in netCDF format, append `ncf=yes` to the
# `make` command
#
################################################################################
## PROGRAMS
# Unified executable names
# The same executable is used for both ECMWF and GFS metdata
# Parallel processing executable
FLEXPART-MPI = FLEXPART_MPI
# Parallel processing executable with debugging info
FLEXPART-MPI-DBG = DBG_FLEXPART_MPI
# Serial processing executable
FLEXPART-SERIAL = FLEXPART
ROOT_DIR = /usr/local
F90 = /usr/bin/gfortran
MPIF90 = /usr/bin/mpifort
INCPATH1 = ${ROOT_DIR}/eccodes/include/
INCPATH3 = /usr/include
LIBPATH1 = ${ROOT_DIR}/eccodes/lib
LIBPATH3 = /lib
### Enable netCDF output?
ifeq ($(ncf), yes)
NCOPT = -DUSE_NCF -lnetcdff -lnetcdf
else
NCOPT = -UUSE_NCF
endif
# path to gributils used to detect meteodata format
VPATH = gributils/
## OPTIMIZATION LEVEL
O_LEV = 0 # [0,1,2,3,g,s,fast]
O_LEV_DBG = g # [0,g]
##################"
#modified to
## LIBRARIES
LIBS = -leccodes_f90 -lm $(NCOPT) -lnetcdff
FFLAGS = -I$(INCPATH1) -I$(INCPATH3) -O$(O_LEV) -g -cpp -m64 -mcmodel=medium -fconvert=little-endian -frecord-marker=4 -fmessage-length=0 -flto=jobserver -O$(O_LEV) $(NCOPT) $(FUSER) #-Warray-bounds -fcheck=all # -march=native
DBGFLAGS = -I$(INCPATH1) -I$(INCPATH3) -O$(O_LEV_DBG) -g3 -ggdb3 -cpp -m64 -mcmodel=medium -fconvert=little-endian -frecord-marker=4 -fmessage-length=0 -flto=jobserver -O$(O_LEV_DBG) $(NCOPT) -fbacktrace -Wall -fdump-core $(FUSER) # -ffpe-trap=invalid,overflow,denormal,underflow,zero -Warray-bounds -fcheck=all
LDFLAGS = $(FFLAGS) -L$(LIBPATH1) -Wl,-rpath,$(LIBPATH1) $(LIBS) -L$(LIBPATH3)
LDDEBUG = $(DBGFLAGS) -L$(LIBPATH1) $(LIBS) -L$(LIBPATH3)
#################
## LIBRARIES
#LIBS = -lgrib_api_f90 -lgrib_api -lm -ljasper -lnetcdff
#~ LIBS = -lgrib_api_f90 -lgrib_api -lm -ljasper $(NCOPT)
#~ FFLAGS = -I$(INCPATH1) -I$(INCPATH2) -O$(O_LEV) -g -cpp -m64 -mcmodel=medium -fconvert=little-endian -frecord-marker=4 -fmessage-length=0 -flto=jobserver -O$(O_LEV) $(NCOPT) $(FUSER) #-Warray-bounds -fcheck=all # -march=native
#~ DBGFLAGS = -I$(INCPATH1) -I$(INCPATH2) -O$(O_LEV_DBG) -g3 -ggdb3 -cpp -m64 -mcmodel=medium -fconvert=little-endian -frecord-marker=4 -fmessage-length=0 -flto=jobserver -O$(O_LEV_DBG) $(NCOPT) -fbacktrace -Wall -fdump-core $(FUSER) # -ffpe-trap=invalid,overflow,denormal,underflow,zero -Warray-bounds -fcheck=all
#~ LDFLAGS = $(FFLAGS) -L$(LIBPATH1) -Wl,-rpath,$(LIBPATH1) $(LIBS) #-L$(LIBPATH2)
#~ LDDEBUG = $(DBGFLAGS) -L$(LIBPATH1) $(LIBS) #-L$(LIBPATH2)
MODOBJS = \
par_mod.o com_mod.o \
conv_mod.o hanna_mod.o \
interpol_mod.o cmapf_mod.o \
unc_mod.o oh_mod.o \
xmass_mod.o flux_mod.o \
point_mod.o outg_mod.o \
mean_mod.o random_mod.o \
class_gribfile_mod.o
MPI_MODOBJS = \
mpi_mod.o
## Serial versions (MPI version with same functionality and name '_mpi.f90' exists)
OBJECTS_SERIAL = \
releaseparticles.o partoutput.o \
partoutput_average.o \
conccalc.o \
init_domainfill.o concoutput.o \
timemanager.o FLEXPART.o \
readpartpositions.o \
partoutput_short.o \
concoutput_nest.o \
boundcond_domainfill.o \
redist.o \
concoutput_surf.o concoutput_surf_nest.o \
concoutput_inversion_nest.o \
concoutput_inversion.o \
getfields.o \
readwind_ecmwf.o
## For MPI version
OBJECTS_MPI = releaseparticles_mpi.o partoutput_mpi.o \
partoutput_average_mpi.o conccalc_mpi.o \
init_domainfill_mpi.o concoutput_mpi.o \
timemanager_mpi.o FLEXPART_MPI.o \
readpartpositions_mpi.o \
partoutput_short_mpi.o \
concoutput_nest_mpi.o \
boundcond_domainfill_mpi.o \
redist_mpi.o \
concoutput_surf_mpi.o concoutput_surf_nest_mpi.o \
getfields_mpi.o \
readwind_ecmwf_mpi.o
OBJECTS_NCF = netcdf_output_mod.o
OBJECTS = \
advance.o initialize.o \
writeheader.o writeheader_txt.o \
partpos_average.o writeprecip.o \
writeheader_surf.o assignland.o\
part0.o gethourlyOH.o\
caldate.o partdep.o \
coordtrafo.o psih.o \
raerod.o readcommand.o \
drydepokernel.o readreceptors.o \
erf.o readavailable.o \
ew.o readreleases.o \
readdepo.o get_vdep_prob.o \
get_wetscav.o readwind_gfs.o \
psim.o outgrid_init.o \
outgrid_init_nest.o calcmatrix.o \
photo_O1D.o readlanduse.o \
interpol_wind.o readoutgrid.o \
interpol_all.o readpaths.o \
getrb.o obukhov.o \
getrc.o convmix.o \
getvdep.o readspecies.o \
interpol_misslev.o richardson.o \
scalev.o verttransform_ecmwf.o \
pbl_profile.o readOHfield.o \
juldate.o verttransform_gfs.o \
interpol_vdep.o interpol_rain.o \
hanna.o wetdepokernel.o \
calcpar.o wetdepo.o \
hanna_short.o windalign.o \
hanna1.o gridcheck_ecmwf.o \
gridcheck_gfs.o gridcheck_nests.o \
readwind_nests.o calcpar_nests.o \
verttransform_nests.o interpol_all_nests.o \
interpol_wind_nests.o interpol_misslev_nests.o \
interpol_vdep_nests.o interpol_rain_nests.o \
readageclasses.o detectformat.o \
calcfluxes.o fluxoutput.o \
qvsat.o skplin.o \
convect43c.o \
sort2.o distance.o \
centerofmass.o plumetraj.o \
openouttraj.o calcpv.o \
calcpv_nests.o distance2.o \
clustering.o interpol_wind_short.o \
interpol_wind_short_nests.o shift_field_0.o \
shift_field.o \
openreceptors.o \
readoutgrid_nest.o \
writeheader_nest.o writeheader_nest_surf.o \
wetdepokernel_nest.o \
drydepokernel_nest.o zenithangle.o \
ohreaction.o getvdep_nests.o \
initial_cond_calc.o initial_cond_output.o initial_cond_output_inversion.o \
dynamic_viscosity.o get_settling.o \
initialize_cbl_vel.o re_initialize_particle.o \
cbl.o
ifeq ($(ncf), yes)
OBJECTS := $(OBJECTS) $(OBJECTS_NCF)
endif
%.o: %.mod
# serial executable
serial: $(FLEXPART-SERIAL)
serial: FC := $(F90)
# parallel processing executable
mpi: $(FLEXPART-MPI)
mpi: FC := $(MPIF90)
# parallel processing with debugging info
mpi-dbg: $(FLEXPART-MPI-DBG)
mpi-dbg: FFLAGS := $(DBGFLAGS)
mpi-dbg: LDFLAGS:= $(LDDEBUG)
mpi-dbg: FC := $(MPIF90)
$(FLEXPART-SERIAL): $(MODOBJS) $(OBJECTS) $(OBJECTS_SERIAL)
+$(FC) -o $@ $(MODOBJS) $(OBJECTS) $(OBJECTS_SERIAL) $(LDFLAGS)
$(FLEXPART-MPI): $(MODOBJS) $(MPI_MODOBJS) $(OBJECTS) $(OBJECTS_MPI)
+$(FC) -o $@ $(MODOBJS) $(MPI_MODOBJS) $(OBJECTS) $(OBJECTS_MPI) \
$(LDFLAGS)
$(FLEXPART-MPI-DBG): $(MODOBJS) $(MPI_MODOBJS) $(OBJECTS) $(OBJECTS_MPI)
+$(FC) -o $@ $(MODOBJS) $(MPI_MODOBJS) $(OBJECTS) $(OBJECTS_MPI) \
$(LDFLAGS)
%.o: %.f90
+$(FC) -c $(FFLAGS) $<
clean:
\rm -f *.o *.mod
cleanall:
\rm -f *.o *.mod $(FLEXPART-MPI) $(FLEXPART-MPI-DBG) $(FLEXPART-SERIAL)
.SUFFIXES = $(SUFFIXES) .f90
## DEPENDENCIES
advance.o: cmapf_mod.o com_mod.o hanna_mod.o interpol_mod.o par_mod.o \
point_mod.o random_mod.o
assignland.o: com_mod.o par_mod.o
boundcond_domainfill.o: com_mod.o par_mod.o point_mod.o random_mod.o
boundcond_domainfill_mpi.o: com_mod.o mpi_mod.o par_mod.o point_mod.o \
random_mod.o
calcfluxes.o: com_mod.o flux_mod.o outg_mod.o par_mod.o
calcmatrix.o: com_mod.o conv_mod.o par_mod.o
calcpar.o: com_mod.o par_mod.o
calcpar_nests.o: com_mod.o par_mod.o
calcpv.o: com_mod.o par_mod.o
calcpv_nests.o: com_mod.o par_mod.o
caldate.o: par_mod.o
cbl.o: com_mod.o par_mod.o
centerofmass.o: par_mod.o
clustering.o: par_mod.o
cmapf_mod.o: par_mod.o
com_mod.o: par_mod.o
conccalc.o: com_mod.o outg_mod.o par_mod.o unc_mod.o
conccalc_mpi.o: com_mod.o mpi_mod.o outg_mod.o par_mod.o unc_mod.o
concoutput.o: com_mod.o mean_mod.o outg_mod.o par_mod.o point_mod.o unc_mod.o
concoutput_inversion.o: com_mod.o mean_mod.o outg_mod.o par_mod.o point_mod.o \
unc_mod.o
concoutput_inversion_nest.o: com_mod.o mean_mod.o outg_mod.o par_mod.o \
point_mod.o unc_mod.o
concoutput_mpi.o: com_mod.o mean_mod.o mpi_mod.o outg_mod.o par_mod.o \
point_mod.o unc_mod.o
concoutput_nest.o: com_mod.o mean_mod.o outg_mod.o par_mod.o point_mod.o \
unc_mod.o
concoutput_nest_mpi.o: com_mod.o mean_mod.o mpi_mod.o outg_mod.o par_mod.o \
point_mod.o unc_mod.o
concoutput_surf.o: com_mod.o mean_mod.o outg_mod.o par_mod.o point_mod.o \
unc_mod.o
concoutput_surf_mpi.o: com_mod.o mean_mod.o mpi_mod.o outg_mod.o par_mod.o \
point_mod.o unc_mod.o
concoutput_surf_nest.o: com_mod.o mean_mod.o outg_mod.o par_mod.o point_mod.o \
unc_mod.o
concoutput_surf_nest_mpi.o: com_mod.o mean_mod.o mpi_mod.o outg_mod.o \
par_mod.o point_mod.o unc_mod.o
conv_mod.o: par_mod.o
convect43c.o: conv_mod.o par_mod.o
convmix.o: com_mod.o conv_mod.o flux_mod.o par_mod.o
coordtrafo.o: com_mod.o par_mod.o point_mod.o
detectformat.o: com_mod.o par_mod.o
distance.o: par_mod.o
distance2.o: par_mod.o
drydepokernel.o: com_mod.o par_mod.o unc_mod.o
drydepokernel_nest.o: com_mod.o par_mod.o unc_mod.o
erf.o: par_mod.o
FLEXPART.o: com_mod.o conv_mod.o netcdf_output_mod.o par_mod.o point_mod.o \
random_mod.o
FLEXPART_MPI.o: com_mod.o conv_mod.o mpi_mod.o netcdf_output_mod.o par_mod.o \
point_mod.o random_mod.o
fluxoutput.o: com_mod.o flux_mod.o outg_mod.o par_mod.o
get_settling.o: com_mod.o par_mod.o
get_vdep_prob.o: com_mod.o interpol_mod.o par_mod.o point_mod.o
get_wetscav.o: com_mod.o par_mod.o point_mod.o
getfields.o: com_mod.o par_mod.o
getfields_mpi.o: com_mod.o mpi_mod.o par_mod.o
gethourlyOH.o: com_mod.o oh_mod.o par_mod.o
getrb.o: par_mod.o
getrc.o: com_mod.o par_mod.o
getvdep.o: com_mod.o par_mod.o
getvdep_nests.o: com_mod.o par_mod.o
grib2check.o: com_mod.o par_mod.o
gridcheck_ecmwf.o: cmapf_mod.o com_mod.o conv_mod.o par_mod.o
gridcheck_gfs.o: cmapf_mod.o com_mod.o conv_mod.o par_mod.o
gridcheck_nests.o: com_mod.o par_mod.o
hanna.o: com_mod.o hanna_mod.o par_mod.o
hanna1.o: com_mod.o hanna_mod.o par_mod.o
hanna_short.o: com_mod.o hanna_mod.o par_mod.o
init_domainfill.o: com_mod.o par_mod.o point_mod.o random_mod.o
init_domainfill_mpi.o: com_mod.o mpi_mod.o par_mod.o point_mod.o random_mod.o
initial_cond_calc.o: com_mod.o outg_mod.o par_mod.o unc_mod.o
initial_cond_output.o: com_mod.o outg_mod.o par_mod.o point_mod.o unc_mod.o
initial_cond_output_inversion.o: com_mod.o outg_mod.o par_mod.o point_mod.o \
unc_mod.o
initialize.o: com_mod.o hanna_mod.o interpol_mod.o par_mod.o random_mod.o
initialize_cbl_vel.o: com_mod.o par_mod.o random_mod.o
interpol_all.o: com_mod.o hanna_mod.o interpol_mod.o par_mod.o
interpol_all_nests.o: com_mod.o hanna_mod.o interpol_mod.o par_mod.o
interpol_misslev.o: com_mod.o hanna_mod.o interpol_mod.o par_mod.o
interpol_misslev_nests.o: com_mod.o hanna_mod.o interpol_mod.o par_mod.o
interpol_mod.o: par_mod.o
interpol_rain.o: par_mod.o
interpol_rain_nests.o: par_mod.o
interpol_vdep.o: com_mod.o interpol_mod.o par_mod.o
interpol_vdep_nests.o: com_mod.o interpol_mod.o par_mod.o
interpol_wind.o: com_mod.o interpol_mod.o par_mod.o
interpol_wind_nests.o: com_mod.o interpol_mod.o par_mod.o
interpol_wind_short.o: com_mod.o interpol_mod.o par_mod.o
interpol_wind_short_nests.o: com_mod.o interpol_mod.o par_mod.o
juldate.o: par_mod.o
mean_mod.o: par_mod.o
mpi_mod.o: com_mod.o par_mod.o unc_mod.o
netcdf_output_mod.o: com_mod.o mean_mod.o outg_mod.o par_mod.o point_mod.o \
unc_mod.o
obukhov.o: par_mod.o
ohreaction.o: com_mod.o oh_mod.o par_mod.o
openouttraj.o: com_mod.o par_mod.o point_mod.o
openreceptors.o: com_mod.o par_mod.o
outg_mod.o: par_mod.o
outgrid_init.o: com_mod.o flux_mod.o oh_mod.o outg_mod.o par_mod.o unc_mod.o
outgrid_init_nest.o: com_mod.o outg_mod.o par_mod.o unc_mod.o
part0.o: par_mod.o
partdep.o: com_mod.o par_mod.o
partoutput.o: com_mod.o par_mod.o
partoutput_average.o: com_mod.o par_mod.o
partoutput_average_mpi.o: com_mod.o mpi_mod.o par_mod.o
partoutput_mpi.o: com_mod.o mpi_mod.o par_mod.o
partoutput_short.o: com_mod.o par_mod.o
partoutput_short_mpi.o: com_mod.o mpi_mod.o par_mod.o
partpos_average.o: com_mod.o par_mod.o
pbl_profile.o: par_mod.o
plumetraj.o: com_mod.o mean_mod.o par_mod.o point_mod.o
psih.o: par_mod.o
psim.o: par_mod.o
raerod.o: par_mod.o
re_initialize_particle.o: com_mod.o par_mod.o
readageclasses.o: com_mod.o par_mod.o
readavailable.o: com_mod.o par_mod.o
readcommand.o: com_mod.o par_mod.o
readdepo.o: com_mod.o par_mod.o
readlanduse.o: com_mod.o par_mod.o
readOHfield.o: com_mod.o oh_mod.o par_mod.o
readoutgrid.o: com_mod.o outg_mod.o par_mod.o
readoutgrid_nest.o: com_mod.o outg_mod.o par_mod.o
readpartpositions.o: com_mod.o par_mod.o random_mod.o
readpartpositions_mpi.o: com_mod.o mpi_mod.o par_mod.o random_mod.o
readpaths.o: com_mod.o par_mod.o
readreceptors.o: com_mod.o par_mod.o
readreleases.o: com_mod.o par_mod.o point_mod.o xmass_mod.o
readspecies.o: com_mod.o par_mod.o
readwind_ecmwf.o: com_mod.o par_mod.o
readwind_ecmwf_mpi.o: com_mod.o mpi_mod.o par_mod.o
readwind_emos.o: com_mod.o par_mod.o
readwind_gfs.o: com_mod.o par_mod.o
readwind_nests.o: com_mod.o par_mod.o
redist.o: com_mod.o conv_mod.o par_mod.o random_mod.o
redist_mpi.o: com_mod.o conv_mod.o mpi_mod.o par_mod.o random_mod.o
releaseparticles.o: com_mod.o par_mod.o point_mod.o random_mod.o xmass_mod.o
releaseparticles_mpi.o: com_mod.o mpi_mod.o par_mod.o point_mod.o \
random_mod.o xmass_mod.o
richardson.o: par_mod.o
scalev.o: par_mod.o
shift_field.o: par_mod.o
shift_field_0.o: par_mod.o
timemanager.o: com_mod.o flux_mod.o netcdf_output_mod.o oh_mod.o outg_mod.o \
par_mod.o point_mod.o unc_mod.o xmass_mod.o
timemanager_mpi.o: com_mod.o flux_mod.o mpi_mod.o netcdf_output_mod.o \
oh_mod.o outg_mod.o par_mod.o point_mod.o unc_mod.o xmass_mod.o
unc_mod.o: par_mod.o
verttransform_ecmwf.o: cmapf_mod.o com_mod.o par_mod.o
verttransform_gfs.o: cmapf_mod.o com_mod.o par_mod.o
verttransform_nests.o: com_mod.o par_mod.o
wetdepo.o: com_mod.o par_mod.o point_mod.o
wetdepokernel.o: com_mod.o par_mod.o unc_mod.o
wetdepokernel_nest.o: com_mod.o par_mod.o unc_mod.o
writeheader.o: com_mod.o outg_mod.o par_mod.o point_mod.o
writeheader_nest.o: com_mod.o outg_mod.o par_mod.o point_mod.o
writeheader_nest_surf.o: com_mod.o outg_mod.o par_mod.o point_mod.o
writeheader_surf.o: com_mod.o outg_mod.o par_mod.o point_mod.o
writeheader_txt.o: com_mod.o outg_mod.o par_mod.o point_mod.o
writeprecip.o: com_mod.o par_mod.o point_mod.o
zenithangle.o: par_mod.o