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setup.py
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setup.py
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# -*- coding: utf-8 -*-
import sys, os
from setuptools import setup
from setuptools.command.test import test as TestCommand
__version__='0.0.16'
# if sys.argv[-1] == 'publish':
# os.system("python setup.py sdist bdist_wheel register upload")
# print(" git tag -a %s -m 'version %s'" % (__version__,__version__))
# print(" git push --tags")
# sys.exit()
def readme():
with open('README.md') as f:
return f.read()
setup(name='meirlop',
version=__version__,
description='Motif Enrichment In Ranked Lists Of Peaks',
long_description=('This project analyzes the relative enrichment of '
'transcription factor binding motifs found in peaks at the top or bottom of '
'a given ranking/score. The design is based on MOODS and statsmodels.'),
classifiers=[
'Development Status :: 2 - Pre-Alpha',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License',
'Programming Language :: Python :: 3',
'Operating System :: MacOS :: MacOS X',
'Operating System :: POSIX',
'Topic :: Software Development :: Libraries'
'Topic :: Scientific/Engineering :: Bio-Informatics'],
keywords= [
'Motif',
'Enrichment',
'Bioinformatics'
],
url='https://github.com/npdeloss/meirlop',
author='Nathaniel Delos Santos',
author_email='npdeloss@ucsd.edu',
license='MIT',
packages=['meirlop'],
entry_points={
'console_scripts':[
'meirlop=meirlop.__main__:main',
'modiplot=meirlop.motif_distribution_plotting:main'
]
},
install_requires=[
'biopython',
'pybedtools',
'logomaker',
'joblib',
'moods-python',
'numpy',
'pandas',
'scikit-learn',
'statsmodels',
'tqdm',
'python-slugify'
],
zip_safe=False,
download_url='https://github.com/npdeloss/meirlop')
__author__ = 'Nathaniel Delos Santos'