NAMESPACE

# Generated by roxygen2: do not edit by hand

export(AddToGroup)
export(RemoveFromGroup)
export(UpdateAnnotationBoundedText)
export(addAnnotationBoundedText)
export(addAnnotationImage)
export(addAnnotationShape)
export(addAnnotationText)
export(addCyEdges)
export(addCyNodes)
export(analyzeNetwork)
export(applyFilter)
export(bundleEdges)
export(checkNotebookIsRunning)
export(checkRunningRemote)
export(clearEdgeBends)
export(clearEdgePropertyBypass)
export(clearNetworkCenterBypass)
export(clearNetworkPropertyBypass)
export(clearNetworkZoomBypass)
export(clearNodeOpacityBypass)
export(clearNodePropertyBypass)
export(clearSelection)
export(cloneNetwork)
export(closeSession)
export(collapseGroup)
export(commandEcho)
export(commandOpenDialog)
export(commandPause)
export(commandQuit)
export(commandRunFile)
export(commandSleep)
export(commandsAPI)
export(commandsGET)
export(commandsHelp)
export(commandsPOST)
export(commandsRun)
export(copyVisualStyle)
export(createColumnFilter)
export(createCompositeFilter)
export(createCytoscapejsFromNetwork)
export(createDegreeFilter)
export(createGraphFromNetwork)
export(createGroup)
export(createGroupByColumn)
export(createIgraphFromNetwork)
export(createNetworkFromCytoscapejs)
export(createNetworkFromDataFrames)
export(createNetworkFromGraph)
export(createNetworkFromIgraph)
export(createSubnetwork)
export(createView)
export(createVisualStyle)
export(cybrowserClose)
export(cybrowserDialog)
export(cybrowserHide)
export(cybrowserList)
export(cybrowserSend)
export(cybrowserShow)
export(cybrowserVersion)
export(cyrestAPI)
export(cyrestDELETE)
export(cyrestGET)
export(cyrestPOST)
export(cyrestPUT)
export(cytoscapeApiVersions)
export(cytoscapeFreeMemory)
export(cytoscapeMemoryStatus)
export(cytoscapeNumberOfCores)
export(cytoscapePing)
export(cytoscapeVersionInfo)
export(deleteAllNetworks)
export(deleteAllVisualStyle)
export(deleteAnnotation)
export(deleteDuplicateEdges)
export(deleteGroup)
export(deleteNetwork)
export(deleteSelectedEdges)
export(deleteSelectedNodes)
export(deleteSelfLoops)
export(deleteStyleMapping)
export(deleteTableColumn)
export(deleteVisualStyle)
export(diffusionAdvanced)
export(diffusionBasic)
export(disableApp)
export(doInitializeSandbox)
export(doRequestRemote)
export(doSetSandbox)
export(dockPanel)
export(enableApp)
export(expandGroup)
export(exportFilters)
export(exportImage)
export(exportJPG)
export(exportNetwork)
export(exportNetworkToNDEx)
export(exportPDF)
export(exportPNG)
export(exportPS)
export(exportSVG)
export(exportVisualStyles)
export(findRemoteCytoscape)
export(fitContent)
export(floatPanel)
export(getAbsSandboxPath)
export(getAllEdges)
export(getAllNodes)
export(getAllStyleMappings)
export(getAnnotationList)
export(getAppInformation)
export(getAppStatus)
export(getAppUpdates)
export(getArrowShapes)
export(getAvailableApps)
export(getBackgroundColorDefault)
export(getBrowserClientChannel)
export(getBrowserClientJs)
export(getCollectionList)
export(getCollectionName)
export(getCollectionNetworks)
export(getCollectionSuid)
export(getCurrentSandbox)
export(getCurrentSandboxName)
export(getCurrentSandboxPath)
export(getCurrentStyle)
export(getDefaultSandbox)
export(getDefaultSandboxPath)
export(getDisabledApps)
export(getEdgeColor)
export(getEdgeCount)
export(getEdgeInfo)
export(getEdgeLineStyle)
export(getEdgeLineWidth)
export(getEdgeProperty)
export(getEdgeSelectionColorDefault)
export(getEdgeTargetArrowShape)
export(getFilterList)
export(getFirstNeighbors)
export(getGroupInfo)
export(getInstalledApps)
export(getJupyterBridgeURL)
export(getLayoutNameMapping)
export(getLayoutNames)
export(getLayoutPropertyNames)
export(getLayoutPropertyType)
export(getLayoutPropertyValue)
export(getLineStyles)
export(getNetworkCenter)
export(getNetworkCount)
export(getNetworkList)
export(getNetworkNDExId)
export(getNetworkName)
export(getNetworkProperty)
export(getNetworkSuid)
export(getNetworkViewSuid)
export(getNetworkViews)
export(getNetworkZoom)
export(getNodeColor)
export(getNodeCount)
export(getNodeHeight)
export(getNodeLabelPosition)
export(getNodeLabelPositionDefault)
export(getNodePosition)
export(getNodeProperty)
export(getNodeSelectionColorDefault)
export(getNodeShapes)
export(getNodeSize)
export(getNodeWidth)
export(getNotebookIsRunning)
export(getSandboxReinitialize)
export(getSelectedEdgeCount)
export(getSelectedEdges)
export(getSelectedNodeCount)
export(getSelectedNodes)
export(getStyleDependencies)
export(getStyleMapping)
export(getTableColumnNames)
export(getTableColumnTypes)
export(getTableColumns)
export(getTableValue)
export(getUninstalledApps)
export(getVisualPropertyDefault)
export(getVisualPropertyNames)
export(getVisualStyleJSON)
export(getVisualStyleNames)
export(groupAnnotation)
export(hideAllPanels)
export(hideEdges)
export(hideNodes)
export(hidePanel)
export(hideSelectedEdges)
export(hideSelectedNodes)
export(importFileFromUrl)
export(importFilters)
export(importNetworkFromFile)
export(importNetworkFromNDEx)
export(importVisualStyles)
export(installApp)
export(invertEdgeSelection)
export(invertNodeSelection)
export(layoutCopycat)
export(layoutNetwork)
export(listGroups)
export(loadTableData)
export(lockNodeDimensions)
export(makeSimpleGraph)
export(makeSimpleIgraph)
export(mapTableColumn)
export(mapVisualProperty)
export(matchArrowColorToEdge)
export(mergeNetworks)
export(notebookExportShowImage)
export(notebookShowImage)
export(openAppStore)
export(openSession)
export(paletteColorBrewerAccent)
export(paletteColorBrewerBlues)
export(paletteColorBrewerBrBG)
export(paletteColorBrewerBuGn)
export(paletteColorBrewerBuPu)
export(paletteColorBrewerDark2)
export(paletteColorBrewerGnBu)
export(paletteColorBrewerGreens)
export(paletteColorBrewerGreys)
export(paletteColorBrewerOrRd)
export(paletteColorBrewerOranges)
export(paletteColorBrewerPRGn)
export(paletteColorBrewerPaired)
export(paletteColorBrewerPastel1)
export(paletteColorBrewerPastel2)
export(paletteColorBrewerPiYG)
export(paletteColorBrewerPuBu)
export(paletteColorBrewerPuBuGn)
export(paletteColorBrewerPuOr)
export(paletteColorBrewerPuRd)
export(paletteColorBrewerPurples)
export(paletteColorBrewerRdBu)
export(paletteColorBrewerRdPu)
export(paletteColorBrewerRdYlBu)
export(paletteColorBrewerReds)
export(paletteColorBrewerSet1)
export(paletteColorBrewerSet2)
export(paletteColorBrewerSet3)
export(paletteColorBrewerYlGn)
export(paletteColorBrewerYlGnBu)
export(paletteColorBrewerYlOrBr)
export(paletteColorBrewerYlOrRd)
export(paletteColorRandom)
export(paletteColorVirdis)
export(removeNodeCustomGraphics)
export(renameNetwork)
export(renameTableColumn)
export(resetDefaultSandbox)
export(rotateLayout)
export(runningRemoteCheck)
export(sandboxGetFileInfo)
export(sandboxGetFrom)
export(sandboxInitializer)
export(sandboxRemove)
export(sandboxRemoveFile)
export(sandboxSendTo)
export(sandboxSet)
export(sandboxUrlTo)
export(saveSession)
export(scaleLayout)
export(selectAll)
export(selectAllEdges)
export(selectAllNodes)
export(selectEdges)
export(selectEdgesAdjacentToNodes)
export(selectEdgesAdjacentToSelectedNodes)
export(selectEdgesConnectingSelectedNodes)
export(selectFirstNeighbors)
export(selectNodes)
export(selectNodesConnectedBySelectedEdges)
export(setBackgroundColorDefault)
export(setCatchupFilterSecs)
export(setCatchupNetworkSecs)
export(setCurrentNetwork)
export(setCurrentSandbox)
export(setCurrentView)
export(setDefaultSandbox)
export(setDefaultSandboxPath)
export(setEdgeColorBypass)
export(setEdgeColorDefault)
export(setEdgeColorMapping)
export(setEdgeFontFaceBypass)
export(setEdgeFontFaceDefault)
export(setEdgeFontFaceMapping)
export(setEdgeFontSizeBypass)
export(setEdgeFontSizeDefault)
export(setEdgeFontSizeMapping)
export(setEdgeLabelBypass)
export(setEdgeLabelColorBypass)
export(setEdgeLabelColorDefault)
export(setEdgeLabelColorMapping)
export(setEdgeLabelDefault)
export(setEdgeLabelMapping)
export(setEdgeLabelOpacityBypass)
export(setEdgeLabelOpacityDefault)
export(setEdgeLabelOpacityMapping)
export(setEdgeLineStyleBypass)
export(setEdgeLineStyleDefault)
export(setEdgeLineStyleMapping)
export(setEdgeLineWidthBypass)
export(setEdgeLineWidthDefault)
export(setEdgeLineWidthMapping)
export(setEdgeOpacityBypass)
export(setEdgeOpacityDefault)
export(setEdgeOpacityMapping)
export(setEdgePropertyBypass)
export(setEdgeSelectionColorDefault)
export(setEdgeSourceArrowColorBypass)
export(setEdgeSourceArrowColorDefault)
export(setEdgeSourceArrowColorMapping)
export(setEdgeSourceArrowMapping)
export(setEdgeSourceArrowShapeBypass)
export(setEdgeSourceArrowShapeDefault)
export(setEdgeSourceArrowShapeMapping)
export(setEdgeTargetArrowColorBypass)
export(setEdgeTargetArrowColorDefault)
export(setEdgeTargetArrowColorMapping)
export(setEdgeTargetArrowMapping)
export(setEdgeTargetArrowShapeBypass)
export(setEdgeTargetArrowShapeDefault)
export(setEdgeTargetArrowShapeMapping)
export(setEdgeTooltipBypass)
export(setEdgeTooltipDefault)
export(setEdgeTooltipMapping)
export(setLayoutProperties)
export(setModelPropagationSecs)
export(setNetworkCenterBypass)
export(setNetworkPropertyBypass)
export(setNetworkZoomBypass)
export(setNodeBorderColorBypass)
export(setNodeBorderColorDefault)
export(setNodeBorderColorMapping)
export(setNodeBorderOpacityBypass)
export(setNodeBorderOpacityDefault)
export(setNodeBorderOpacityMapping)
export(setNodeBorderWidthBypass)
export(setNodeBorderWidthDefault)
export(setNodeBorderWidthMapping)
export(setNodeColorBypass)
export(setNodeColorDefault)
export(setNodeColorMapping)
export(setNodeComboOpacityMapping)
export(setNodeCustomBarChart)
export(setNodeCustomBoxChart)
export(setNodeCustomHeatMapChart)
export(setNodeCustomLineChart)
export(setNodeCustomLinearGradient)
export(setNodeCustomPieChart)
export(setNodeCustomPosition)
export(setNodeCustomRadialGradient)
export(setNodeCustomRingChart)
export(setNodeFillOpacityBypass)
export(setNodeFillOpacityDefault)
export(setNodeFillOpacityMapping)
export(setNodeFontFaceBypass)
export(setNodeFontFaceDefault)
export(setNodeFontFaceMapping)
export(setNodeFontSizeBypass)
export(setNodeFontSizeDefault)
export(setNodeFontSizeMapping)
export(setNodeHeightBypass)
export(setNodeHeightDefault)
export(setNodeHeightMapping)
export(setNodeLabelBypass)
export(setNodeLabelColorBypass)
export(setNodeLabelColorDefault)
export(setNodeLabelColorMapping)
export(setNodeLabelDefault)
export(setNodeLabelMapping)
export(setNodeLabelOpacityBypass)
export(setNodeLabelOpacityDefault)
export(setNodeLabelOpacityMapping)
export(setNodeLabelPositionBypass)
export(setNodeLabelPositionDefault)
export(setNodeOpacityBypass)
export(setNodePositionBypass)
export(setNodePropertyBypass)
export(setNodeSelectionColorDefault)
export(setNodeShapeBypass)
export(setNodeShapeDefault)
export(setNodeShapeMapping)
export(setNodeSizeBypass)
export(setNodeSizeDefault)
export(setNodeSizeMapping)
export(setNodeTooltipBypass)
export(setNodeTooltipDefault)
export(setNodeTooltipMapping)
export(setNodeWidthBypass)
export(setNodeWidthDefault)
export(setNodeWidthMapping)
export(setNotebookIsRunning)
export(setSandboxReinitialize)
export(setStyleDependencies)
export(setVisualPropertyDefault)
export(setVisualStyle)
export(spoofResponse)
export(syncNodeCustomGraphicsSize)
export(toggleGraphicsDetails)
export(ungroupAnnotation)
export(unhideAll)
export(unhideEdges)
export(unhideNodes)
export(uninstallApp)
export(updateAnnotationImage)
export(updateAnnotationShape)
export(updateAnnotationText)
export(updateApp)
export(updateGroupAnnotation)
export(updateNetworkInNDEx)
export(updateStyleDefaults)
export(updateStyleMapping)
exportClasses(spoofResponse)
import(IRkernel)
import(RCurl)
import(RJSONIO)
import(base64enc)
import(httr)
import(stringi)
import(uuid)
importFrom(BiocGenerics,cbind)
importFrom(BiocGenerics,colnames)
importFrom(BiocGenerics,do.call)
importFrom(BiocGenerics,setdiff)
importFrom(IRdisplay,display_jpeg)
importFrom(IRdisplay,display_pdf)
importFrom(IRdisplay,display_png)
importFrom(IRdisplay,display_svg)
importFrom(RColorBrewer,brewer.pal)
importFrom(RJSONIO,fromJSON)
importFrom(RJSONIO,isValidJSON)
importFrom(RJSONIO,toJSON)
importFrom(XML,htmlParse)
importFrom(XML,xmlValue)
importFrom(XML,xpathSApply)
importFrom(base64url,base64_urlencode)
importFrom(fs,is_absolute_path)
importFrom(glue,glue)
importFrom(gplots,col2hex)
importFrom(graph,addEdge)
importFrom(graph,addNode)
importFrom(graph,edgeData)
importFrom(graph,edgeDataDefaults)
importFrom(graph,nodeData)
importFrom(graph,nodeDataDefaults)
importFrom(httr,DELETE)
importFrom(httr,GET)
importFrom(httr,POST)
importFrom(httr,PUT)
importFrom(httr,content)
importFrom(httr,content_type_json)
importFrom(methods,is)
importFrom(methods,new)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(utils,URLencode)
importFrom(utils,browseURL)
importFrom(utils,file_test)
importFrom(utils,head)
importFrom(utils,tail)