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<!DOCTYPE html>
<html lang="" xml:lang="">
<head>
<title>Spatial Transcriptomics</title>
<meta charset="utf-8" />
<meta name="author" content="Leonardo Collado-Torres" />
<meta name="date" content="2020-03-22" />
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gtag('js', new Date());
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class: center, middle, inverse, title-slide
# <strong>Spatial Transcriptomics</strong>
## Analyzing <strong>scRNA-seq</strong> data with <strong>Bioconductor</strong> for <strong>LCG-EJ-UNAM</strong> March 2020
### <a href="http://lcolladotor.github.io/">Leonardo Collado-Torres</a>
### 2020-03-22
---
class: inverse
.center[
<a href="https://bioconductor.org/"><img src="https://osca.bioconductor.org/cover.png" style="width: 30%"/></a>
<a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png" /></a><br />This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/4.0/">Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License</a>.
<a href='https://clustrmaps.com/site/1b5pl' title='Visit tracker'><img src='//clustrmaps.com/map_v2.png?cl=ffffff&w=150&t=n&d=tq5q8216epOrQBSllNIKhXOHUHi-i38brzUURkQEiXw'/></a>
]
.footnote[ Download the materials for this course with `usethis::use_course('lcolladotor/osca_LIIGH_UNAM_2020')` or view online at [**lcolladotor.github.io/osca_LIIGH_UNAM_2020**](http://lcolladotor.github.io/osca_LIIGH_UNAM_2020).]
<style type="text/css">
/* From https://github.com/yihui/xaringan/issues/147 */
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---
class: middle
.center[
# Thanks!
Slides created via the R package [**xaringan**](https://github.com/yihui/xaringan) and themed with [**xaringanthemer**](https://github.com/gadenbuie/xaringanthemer).
This course is based on the book [**Orchestrating Single Cell Analysis with Bioconductor**](https://osca.bioconductor.org/) by [Aaron Lun](https://www.linkedin.com/in/aaron-lun-869b5894/), [Robert Amezquita](https://robertamezquita.github.io/), [Stephanie Hicks](https://www.stephaniehicks.com/) and [Raphael Gottardo](http://rglab.org), plus [**WEHI's scRNA-seq course**](https://drive.google.com/drive/folders/1cn5d-Ey7-kkMiex8-74qxvxtCQT6o72h) by [Peter Hickey](https://www.peterhickey.org/).
You can find the files for this course at [lcolladotor/osca_LIIGH_UNAM_2020](https://github.com/lcolladotor/osca_LIIGH_UNAM_2020).
Instructor: [**Leonardo Collado-Torres**](http://lcolladotor.github.io/).
<a href="https://www.libd.org"><img src="img/LIBD_logo.jpg" style="width: 20%" /></a>
]
.footnote[ Download the materials for this course with `usethis::use_course('lcolladotor/osca_LIIGH_UNAM_2020')` or view online at [**lcolladotor.github.io/osca_LIIGH_UNAM_2020**](http://lcolladotor.github.io/osca_LIIGH_UNAM_2020).]
---
# R session information
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```r
options(width = 120)
sessioninfo::session_info()
```
```
## ─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────
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## pkgload 1.0.2 2018-10-29 [1] CRAN (R 3.6.0)
## prettyunits 1.1.1 2020-01-24 [1] CRAN (R 3.6.2)
## processx 3.4.2 2020-02-09 [1] CRAN (R 3.6.0)
## ps 1.3.2 2020-02-13 [1] CRAN (R 3.6.0)
## R6 2.4.1 2019-11-12 [1] CRAN (R 3.6.1)
## Rcpp 1.0.3 2019-11-08 [1] CRAN (R 3.6.0)
## remotes 2.1.1 2020-02-15 [1] CRAN (R 3.6.0)
## rlang 0.4.5 2020-03-01 [1] CRAN (R 3.6.0)
## rmarkdown 2.1 2020-01-20 [1] CRAN (R 3.6.0)
## rprojroot 1.3-2 2018-01-03 [1] CRAN (R 3.6.0)
## rsconnect 0.8.16 2019-12-13 [1] CRAN (R 3.6.2)
## rstudioapi 0.11 2020-02-07 [1] CRAN (R 3.6.0)
## sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 3.6.0)
## stringi 1.4.6 2020-02-17 [1] CRAN (R 3.6.0)
## stringr 1.4.0 2019-02-10 [1] CRAN (R 3.6.0)
## testthat * 2.3.2 2020-03-02 [1] CRAN (R 3.6.2)
## usethis * 1.5.1 2019-07-04 [1] CRAN (R 3.6.0)
## withr 2.1.2 2018-03-15 [1] CRAN (R 3.6.0)
## xaringan 0.15 2020-03-04 [1] CRAN (R 3.6.3)
## xaringanthemer * 0.2.0 2020-03-22 [1] Github (gadenbuie/xaringanthemer@460f441)
## xfun 0.12 2020-01-13 [1] CRAN (R 3.6.0)
## yaml 2.2.1 2020-02-01 [1] CRAN (R 3.6.0)
##
## [1] /Library/Frameworks/R.framework/Versions/3.6/Resources/library
```
]]
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