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@OHDSI Observational Health Data Sciences and Informatics

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    304 repositories

    • CommonDataModel

      Public
      Definition and DDLs for the OMOP Common Data Model (CDM)
      HTML
      •448•877•87•11•Updated Sep 30, 2024Sep 30, 2024

    • CohortDiagnostics

      Public
      An R package for performing various cohort diagnostics.
      hades
      R
      •48•41•53•3•Updated Sep 30, 2024Sep 30, 2024

    • phenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•1•8•0•Updated Sep 30, 2024Sep 30, 2024

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •5•12•39•1•Updated Sep 30, 2024Sep 30, 2024

    • Bouzyges

      Public
      Python
      •1•3•0•0•Updated Sep 30, 2024Sep 30, 2024

    • ConceptSetDiagnostics

      Public
      Package to assist with design diagnostics for concept set
      R
      •
      Other
      •1•0•1•0•Updated Sep 30, 2024Sep 30, 2024

    • SqlRender

      Public
      This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
      hades
      R
      •
      Other
      •77•81•11•0•Updated Sep 30, 2024Sep 30, 2024

    • CohortMethod

      Public
      An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
      hades
      R
      •57•82•17•1•Updated Sep 30, 2024Sep 30, 2024

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•10•0•Updated Sep 30, 2024Sep 30, 2024

    • CohortGenerator

      Public
      Cohort Generation for the OMOP Common Data Model
      hades
      R
      •10•11•18•2•Updated Sep 30, 2024Sep 30, 2024

    • Strategus

      Public
      [Under development] An R packages for coordinating and executing analytics using HADES modules
      R
      •11•7•16•2•Updated Sep 30, 2024Sep 30, 2024

    • GIS

      Public
      R
      •
      Apache License 2.0
      •9•9•142•2•Updated Sep 30, 2024Sep 30, 2024

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •88•187•68•2•Updated Sep 30, 2024Sep 30, 2024

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•216•213•19•Updated Sep 30, 2024Sep 30, 2024

    • EmpiricalCalibration

      Public
      An R package for performing empirical calibration of observational study estimates
      hades
      R
      •9•10•2•0•Updated Sep 30, 2024Sep 30, 2024

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Sep 30, 2024Sep 30, 2024

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •3•9•14•3•Updated Sep 29, 2024Sep 29, 2024

    • PhenotypeLibrary

      Public
      A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohdsi-phenotype-library-announcements/16910
      hades
      R
      •
      Other
      •16•39•4•0•Updated Sep 29, 2024Sep 29, 2024

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •15•14•1•2•Updated Sep 27, 2024Sep 27, 2024

    • OhdsiShinyModules

      Public
      An R package containing Shiny modules used by various OHDSI Shiny apps
      R
      •11•8•48•4•Updated Sep 27, 2024Sep 27, 2024

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •166•128•134•19•Updated Sep 27, 2024Sep 27, 2024

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •136•266•214•14•Updated Sep 26, 2024Sep 26, 2024

    • InspectOMOP

      Public
      InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databases following the OHDSI OMOP Common Data Model(CDM) standard v>=5.
      Python
      •
      GNU Affero General Public License v3.0
      •2•13•0•0•Updated Sep 26, 2024Sep 26, 2024

    • CommunityDashboard

      Public
      Dashboard to monitor the health of the OHDSI community. A Flask app of Dash Dashboards for tracking public API's
      TypeScript
      •
      Apache License 2.0
      •1•5•11•0•Updated Sep 26, 2024Sep 26, 2024

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•0•21•0•Updated Sep 26, 2024Sep 26, 2024

    • ShinyAppBuilder

      Public
      Create shiny apps using modules from OhdsiShinyModules or custom modules
      R
      •2•5•5•1•Updated Sep 25, 2024Sep 25, 2024

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•38•3•Updated Sep 25, 2024Sep 25, 2024

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •0•0•7•1•Updated Sep 25, 2024Sep 25, 2024

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•19•5•Updated Sep 25, 2024Sep 25, 2024

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      Java
      •7•8•4•1•Updated Sep 25, 2024Sep 25, 2024