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    79 repositories

    • ggbreak

      Public
      One-function R package for adding a y-axis break symbol to a ggplot object
      data-visualization
      R
      •
      Other
      •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • ukhsa-science-research-site-dev

      Public
      HTML
      •
      MIT License
      •4•0•0•1•Updated Oct 3, 2024Oct 3, 2024

    • LOMA

      Public
      A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.
      metagenomic-pipelineoxford-nanopore-sequencing
      Nextflow
      •
      GNU General Public License v3.0
      •0•6•0•0•Updated Oct 1, 2024Oct 1, 2024

    • ntbs_Beta

      Public
      C#
      •1•2•0•67•Updated Oct 1, 2024Oct 1, 2024

    • digital-form-builder

      Public
      Exploring how to quickly and easily design/prototype/deploy high quality digital forms for UK Gov. Based on the excellent work by DEFRA. Currently maintained by jen+forms@cautionyourblast.com at Caution Your Blast and a community collaboration between FCDO, HO, GDS, DfE, DIT, Version 1
      TypeScript
      •
      MIT License
      •33•2•0•1•Updated Sep 27, 2024Sep 27, 2024

    • within-patient-pOXA48-conjugation

      Public
      An analysis on Plasmid conjugation for within-patient plasmid diversity
      HTML
      •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • statistics-production-hub

      Public
      A hub to host our best practice guidance resources.
      Ruby
      •
      MIT License
      •1•3•1•0•Updated Sep 11, 2024Sep 11, 2024

    • PHDS_fingertips_py

      Public
      HTML
      •
      GNU General Public License v3.0
      •5•12•5•1•Updated Sep 5, 2024Sep 5, 2024

    • pygom

      Public
      ODE modelling in Python
      Python
      •
      GNU General Public License v2.0
      •20•27•39•3•Updated Sep 2, 2024Sep 2, 2024

    • ntbs-reporting

      Public
      TSQL
      •0•2•0•0•Updated Aug 7, 2024Aug 7, 2024

    • ukhsa-science-research-site

      Public
      HTML
      •
      MIT License
      •4•1•0•0•Updated Jul 9, 2024Jul 9, 2024

    • drivers_epidemic_dynamics_from_nhs_covid19_app

      Public
      Code for the publication "Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements" by Kendall et al.
      R
      •0•1•0•0•Updated Jun 12, 2024Jun 12, 2024

    • SDLC

      Public
      0•0•0•0•Updated May 17, 2024May 17, 2024

    • UKPID-Backend

      Public
      Public mirror of the UKPID Backend application currently in development by Juicy Media.
      PHP
      •
      MIT License
      •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

    • UKPID-Frontend

      Public
      Public mirror of the UKPID Desktop application currently in development by Juicy Media.
      Vue
      •
      MIT License
      •0•0•0•0•Updated Mar 26, 2024Mar 26, 2024

    • PHEindicatormethods

      Public
      R
      •
      GNU General Public License v3.0
      •15•26•12•1•Updated Jan 30, 2024Jan 30, 2024

    • variant_definitions

      Public
      19•74•8•0•Updated Jan 23, 2024Jan 23, 2024

    • covid-pass-verifier

      Public archive
      The COVID Pass Verifier app is the official NHS COVID Pass Verifier for England and Wales. NHS COVID Pass Verifier app is a secure way to scan an individual’s NHS COVID Pass and check that they have been fully vaccinated against COVID-19, had a negative test, or have recovered from COVID-19.
      C#
      •
      MIT License
      •18•52•8•0•Updated Jan 17, 2024Jan 17, 2024

    • hcaidcs

      Public
      An R package to interact with data from PHE's HCAI data capture system. https://hcaidcs.phe.org.uk/WebPages/GeneralHomePage.aspx
      r
      R
      •1•3•6•0•Updated Jan 11, 2024Jan 11, 2024

    • risk_scoring_nhs_covid19_app

      Public
      R
      •
      MIT License
      •0•4•0•0•Updated Dec 20, 2023Dec 20, 2023

    • ukhsa-project-template

      Public
      A cookie cutter template to set up a data science folder structure with git collaboration in mind.
      MIT License
      •0•0•0•0•Updated Dec 7, 2023Dec 7, 2023

    • epi-ensemble-MTP-journal-code

      Public
      This code produces the results discussed in a paper I am submitting to the Proceedings of the Royal Society A. It is a requirement of the Journal that the code be released to them
      0•0•0•0•Updated Nov 2, 2023Nov 2, 2023

    • UKHSAConferenceWebsite23

      Public
      0•1•0•0•Updated Oct 13, 2023Oct 13, 2023

    • fingertipscharts

      Public
      rvisualisationpublichealthfingertips
      R
      •6•11•6•1•Updated Sep 21, 2023Sep 21, 2023

    • covid-pass-letter-frontend

      Public archive
      The frontend web application for the NHS COVID Pass letter service
      C#
      •
      MIT License
      •1•0•0•0•Updated Sep 12, 2023Sep 12, 2023

    • covid-pass-letter-backend

      Public archive
      The backend applications and infrastructure for the NHS COVID Pass letter service
      C#
      •
      MIT License
      •3•0•0•0•Updated Sep 12, 2023Sep 12, 2023

    • covid-pass-backend

      Public archive
      The backend applications and infrastructure for the NHS COVID Pass service
      C#
      •
      MIT License
      •0•1•0•0•Updated Sep 8, 2023Sep 8, 2023

    • covid-pass-web

      Public archive
      The frontend web application for the NHS COVID Pass service
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Sep 7, 2023Sep 7, 2023

    • data_management_system

      Public
      Ruby
      •
      MIT License
      •4•0•0•4•Updated Aug 31, 2023Aug 31, 2023

    • github-pages-deploy-action

      Public
      TypeScript
      •
      MIT License
      •0•1•0•9•Updated Jul 14, 2023Jul 14, 2023