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Jun 13, 2023 - Shell
cellranger
Here are 18 public repositories matching this topic...
A Haskell script that takes in a configuration YAML to create and launch Cell Ranger count and/or vdj runs via LSF bsub commands accordingly.
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Mar 23, 2021 - Haskell
WDLized Cell Ranger Cell Plex
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Nov 13, 2021 - WDL
Repository of the master project in Bioinformatics at Lund University
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Jan 16, 2023 - Jupyter Notebook
Basic scRNA-seq analysis in Seurat using GBM data
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Sep 6, 2022
V(D)J T Cell and B Cell Analysis with cellranger vdj
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Feb 4, 2023 - Shell
10x Cell Ranger Docker Image
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Sep 2, 2021 - Shell
A Snakemake workflow for analysing single cell data obtained from Cell ranger platform using Seurat package
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Jun 14, 2024 - Python
WDLized Cell Ranger GEX
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Nov 9, 2021 - WDL
A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger
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Jan 27, 2022 - Python
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Mar 10, 2022 - Python
用于bioos的大规模数据分析
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May 14, 2024 - WDL
WDL workflow language program, developed for singlecell rna sequencing data analysis, maintained by @OOAAHH(SunHao) .
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May 22, 2024 - WDL
scRNA-seq analysis 2022 workshop hosted by UMICH's CDS-SR
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Apr 26, 2023 - HTML
Nextflow pipeline wrapper for executing Cell Ranger
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Mar 8, 2022 - Nextflow
simplified cellranger for long-read data
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Sep 18, 2024 - Python
A single-cell RNAseq pipeline for 10X genomics data
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Oct 4, 2024 - Nextflow
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