Fast demultiplexing of Illumina FASTQ files using Python.
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Updated
Jun 12, 2017 - Python
Fast demultiplexing of Illumina FASTQ files using Python.
Please switch to https://github.com/OpenGene/defastq
Demultiplexing utility, companion to flowcelltool.
fdemux is a FASTA/FASTQ demultiplexer with support for (arbitrarily) fuzzy barcode matching, asymmetric barcoding, and parallel processing.
Tool for demultiplexing Illumina FASTQ reads when no index reads are available. Intended usage is a a recovery tool.
Simple management of Illumina sequencing flowcells
This module implements helper functions that allow you to set parameters to a context. The parameters provided will be spread across the commands in the context.
DEMUX, ALIGN, DESEQ2 DGE CALLS
Udo Stenzel’s jivebunny — a probabilistic demultiplexer for Illumina sequencing data [MIRROR]
A repository for generating de-multiplexing report for Illumina sequencing runs using Pyspark
DEmultiplexing MOnitoring Report Tool. DEMORT evaluates demultiplexed fastq files by computing various metrics.
GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
⏩ Streamed and parallel demultiplexing of fastq files in python
POC code for specific streaming demultiplexing applications; contact author for more details.
Base-call error-filtering and read preprocessing pipeline for fastq libraries
Tool to demux/unpack mxv (MAGIX video) files
Demultiplexing pipeline for sequencing data
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