Genetic Algorithms WS15/16 hda
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Updated
Sep 8, 2016 - C#
Genetic Algorithms WS15/16 hda
Zhian Kamvar's Ph. D. dissertation from Oregon State University
Setup and starter script for the PLINK R plugin.
Source code for the GADGET compute module: https://gadget.biosci.gatech.edu/compute/
Simulate basic population genetics on fake creatures' DNA. Concepts of mutation, crossover, fitness distribution covered. Prototype algorithm for ProcJam 2018
MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/functions (including an example dataset) to carry out the MultiSKAT tests.
Tool for integrative gene-based association analysis using GWAS summary stats
MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
Materials for the ACE - Uganda course "Principles of Sequence Analysis and Phylogenetics" given in Spring 2020.
Human gene mutation classification using convolutional neural networks
Introductory notes on using Geneious (Biomatters) at NIAID
Analysis of Sars Cov-2 Gene Mutations using Python Numpy and Matplotlib
Solving N-Queen problem using Genetic Algorithm.
DNAc is a programming language for DNAs.
TREDPARSE: HLI Short Tandem Repeat (STR) caller
Code and raw data used in the analyses for: Trans-acting genetic variation affects the expression of adjacent genes via horizontal mechanisms.
Python package for reading, combining, meta-analyzing, and saving GWAS summary statistics data.
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