Overture.bio website, based on Gatsby static site generator
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Overture.bio website, based on Gatsby static site generator
A system for the integration and analysis of heterogeneous functional genomics data.
The GeneWeaver database interaction code.
Tool to calculate a "k-mer pattern partition" from position specific k-mer counts.
The core library for GeneWeaver projects.
Documentation site for the Geneweaver project.
Ortholog/homolog mapping for Geneweaver
GETS: a Genomic Tree based Sparse solver. This package accompanies an article to be published in the forthcoming Birkhäuser-ANHA book "Explorations in the Mathematics of Data Science" --- "A genomic tree based sparse solver" by Timothy A. Davis and Srinivas Subramanian.
The GitHub repository for genomic data science is a collection of resources, tools, and code snippets for analyzing and interpreting genomic data.
GQuery is a software tool for rapidly querying large numbers of bgzip compressed, tabix indexed genomic data files e.g. vcf, maf, bed, bedGraph, etc. from multiple species with different genome builds without the need to develop, debug, and maintain custom file parsers. Search for particular germline or somatic mutations, copy number changes, di…
Introduction to Genomic Data Science with R
A repository containing all the file projects that I have for the Bioinformatics 5 (COMP 4312d) course.
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
My personal genomic data science project
Classify enzymes with geomic sequence using spark-ML
Python for Bioinformatics
Hormone Therapy Decision Support System for Breast Cancer
Study plan for learning Health Data Science(HDS)
Sequencing Data Analysis
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