* Update README.md

Update citation.

* Update README.md

Co-authored-by: Junpeng Lao <junpenglao@gmail.com>

* Bump python version

* update bool inverse

* vmaping over parameters in base

* switch from mcmc_factory to just passing in parameters

* pre-commit and typing

* CRU and docs improvement

* pre-commit

* code review updates

* pre-commit

* rename test

* Migrate from deprecated `host_callback` to `io_callback`

Co-Authored-By:
George Necula <gnecula@users.noreply.github.com>

* Format file

* Fix bug

* Fix MALA transition energy

* Use a different logic.

* Replace iterative RNG split and carry with `jax.random.fold_in`

* revert unintended change

* file formatting

* change `jax.tree_map` to `jax.tree.map`

* revert unintended file

* fiddle with rng_key

* seed again

* more

* removing export

* removal of classes, tests passing

* linter

* fix on test

* linter

* removing parametrization on test

* code review updates

* exporting as_top_level_api in dynamic_hmc

* linter

* code review update: replace imports

Fix #665

* enable AdaptationInfo filtering

* revert progress_bar

* fix pre-commit

* fix empty sets

* enable adapt info filtering for all adaptation algorithms

* fix precommit /progressbar=True

* change filter tuple to use tree_map

…tial_state` (#672)

* UPDATE DOCSTRING

* ADD STREAMING VERSION

* UPDATE TESTS

* ADD DOCSTRING

* ADD TEST

* REFACTOR RUN_INFERENCE_ALGORITHM

* UPDATE DOCSTRING

* Precommit

* CLEAN TESTS

* ADD INITIAL_POSITION

* FIX TEST

* RENAME O

* FIX DOCSTRING

* PUT EXPECTATION AFTER TRANSFORM

* TESTS

* TESTS

* UPDATE DOCSTRING

* ADD STREAMING VERSION

* ADD PRECONDITIONING TO MCLMC

* ADD PRECONDITIONING TO TUNING FOR MCLMC

* UPDATE GITIGNORE

* UPDATE GITIGNORE

* UPDATE TESTS

* UPDATE TESTS

* ADD DOCSTRING

* ADD TEST

* STREAMING AVERAGE

* ADD TEST

* REFACTOR RUN_INFERENCE_ALGORITHM

* UPDATE DOCSTRING

* Precommit

* CLEAN TESTS

* GITIGNORE

* PRECOMMIT CLEAN UP

* ADD INITIAL_POSITION

* FIX TEST

* ADD TEST

* REMOVE BENCHMARKS

* BUG FIX

* CHANGE PRECISION

* CHANGE PRECISION

* RENAME O

* UPDATE STREAMING AVG

* UPDATE PR

* RENAME STD_MAT

* TESTS

* TESTS

* UPDATE DOCSTRING

* ADD STREAMING VERSION

* ADD PRECONDITIONING TO MCLMC

* ADD PRECONDITIONING TO TUNING FOR MCLMC

* UPDATE GITIGNORE

* UPDATE GITIGNORE

* UPDATE TESTS

* UPDATE TESTS

* ADD DOCSTRING

* ADD TEST

* STREAMING AVERAGE

* ADD TEST

* REFACTOR RUN_INFERENCE_ALGORITHM

* UPDATE DOCSTRING

* Precommit

* CLEAN TESTS

* GITIGNORE

* PRECOMMIT CLEAN UP

* FIX SPELLING, ADD OMELYAN, EXPORT COEFFICIENTS

* TEMPORARILY ADD BENCHMARKS

* ADD INITIAL_POSITION

* FIX TEST

* CLEAN UP

* REMOVE BENCHMARKS

* ADD TEST

* REMOVE BENCHMARKS

* BUG FIX

* CHANGE PRECISION

* CHANGE PRECISION

* ADD OMELYAN TEST

* RENAME O

* UPDATE STREAMING AVG

* UPDATE PR

* RENAME STD_MAT

* MERGE MAIN

* REMOVE COEFFICIENT EXPORTS

* Minor formatting

* formatting

* fix test

* formatting

* FIX KWARG BUG

* FIX KWARG BUG

* Apply function on pytree directly.

Avoiding unnecssary unpacking

* Fix kwarg

* add parameter filtering

* fix parameter split + docstring

* change extend_paramss

* Fix equation formatting

* Clarify JAX gradient error

* Fix punctuation + capitalization

* Fix grammar

Should not begin sentence with "i.e." in English.

* Fix math formatting error

* Fix typo

Change parallel _ensample_ chain adaptation to parallel _ensemble_ chain adaptation.

* Add SVGD citation to appear in doc

Currently the SVGD paper is only cited in the `kernel` function, which is defined _within_ the `build_kernel` function. Because of this nested function format, the SVGD paper is _not_ cited in the documentation.

To fix this, I added a citation to the SVGD paper in the `as_top_level_api` docstring.

* Fix grammar + clarify doc

* Fix typo

---------

Co-authored-by: Junpeng Lao <junpenglao@gmail.com>

The jitted step remained unused, leading to the example running with an uncompiled nuts.step. 

Changing this reduces the execution time by a factor of 30 on my system and showcases blackjax' speed.

* enable pmap progbar

* fix bar creation

* add locking

* fix formatting

* switch to using chain state

* fix minor type errors

* storing only expectation values

* fixed memory efficient sampling

* clean up

* renaming vars

* precommit fixes

* fixing tests

* fixing tests

* fixing tests

* fixing tests

* fixing tests

* merge main

* burn in and fix tests

* burn in and fix tests

* minor fixes

* minor fixes

* minor fixes

---------

Co-authored-by: jakob.robnik@gmail.com <jakob.robnik@gmail.com>