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ModuleNotFoundError in singularity image in version cell2location-v0.06-alpha.sif #137
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Please don't use the singularity image for now. Follow the
installation instructions in the readme - which should generally work.
…On Tue, 29 Mar 2022, 13:49 CeliaLerma, ***@***.***> wrote:
Hi,
I am trying to run the new tutorial of cell2location in the latest
singularity image version (cell2location-v0.06-alpha.sif) and I am
encountering this problem:
singularity shell cell2location-v0.06-alpha.sif
python
import cell2location
from cell2location.utils.filtering import filter_genes
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ModuleNotFoundError: No module named 'cell2location.utils'
Am I using a wrong image? Which one should I use? I have also tried to run
it using v0.05 and it still does not work.
Thank you for your time.
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Thanks for the quick reply! I will try with the conda enviroment instead |
Hi, I created an environment this morning and installed:
But this error pops up:
I have also tried with Thank you for your time |
Hi again can you try this solution? |
Hi,
These are my package versions:
Are these the correct ones? Thanks! |
Hi,
I am trying to run the new tutorial of cell2location in the latest singularity image version (cell2location-v0.06-alpha.sif) and I am encountering this problem:
Am I using a wrong image? Which one should I use? I have also tried to run it using v0.05 and it still does not work.
Thank you for your time.
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