Skip to content
/ oneSC Public

infer transcription factors circuits, simulate single cell expression trajectories

Notifications You must be signed in to change notification settings

CahanLab/oneSC

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

OneSC (One tool to Simulate Cells)

OneSC is a 2-in-1 computational tool that does two things:

  1. Infer a functional transcription factors circuit that describe cell state transitions in the single-cell expression data

  2. Simulate synthetic single-cell expression profiles that mimic cell state transitions using the core transcription factors circuit as regulatory backbone

You can read more about it in our preprint.

OneSC documentation is available through the link below.

Web documentation

About

infer transcription factors circuits, simulate single cell expression trajectories

Resources

Stars

Watchers

Forks

Languages