v0.5.4

Phylo v0.5.4

Diff since v0.5.3

v0.5.3

Phylo v0.5.3

Diff since v0.5.2

Merged pull requests:

• Metadata (#98) (@richardreeve)

v0.5.2

Phylo v0.5.2

Diff since v0.5.1

Merged pull requests:

• Extensions (#90) (@richardreeve)
• Node renaming (#91) (@richardreeve)
• Standardising formatting (#92) (@richardreeve)
• Minor fixes (#96) (@richardreeve)

Closed issues:

• editing leaf names (#54)
• How can I rename the leaf nodes of a ::RootedTree? (#70)
• Support extended Newick? (#78)
• How to cite Phylo.jl? (#83)
• problem with outputnode function (#95)

v0.5.1

Phylo v0.5.1

Diff since v0.5.0

Merged pull requests:

• Allow export of trees (#88) (@richardreeve)
• Vectors can be AbstractVectors (#89) (@richardreeve)

Closed issues:

• type signatures (#22)
• Test coverage (#50)
• Add function to save/write a tree in Newick format (#61)
• Extraneous linebreaks in show methods (#69)
• parsenexus() tree validation fails if '-' in TaxLabels (#75)
• Tree saving available? (#84)

v0.5.0

Phylo v0.5.0

Diff since v0.4.24

Breaking changes

• Add recursive tree, node and branch types, allowing type stability.
• Note, this is a breaking change because the RootedTree and UnrootedTree types are now an alias for RecursiveTree, not LinkTree for efficiency.

Other changes

• Improve testing, more type stability and validation

Merged pull requests:

• Add fully recursive types, speed up parser, improve testing (#87) (@richardreeve)

v0.4.24

Phylo v0.4.24

Diff since v0.4.23

Merged pull requests:

• 1.9 fixes (#86) (@richardreeve)

v0.4.23

Phylo v0.4.23

Diff since v0.4.22

Closed issues:

• Warning about unused type variables during precompilation (#81)

Merged pull requests:

• Fix unused types warnings (#82) (@cossio)

v0.4.22

Phylo v0.4.22

Diff since v0.4.21

Closed issues:

• enum for trait simulation only works in global scope (#68)
• How to make colorbar disctrete? (#72)
• Migrate from LightGraphs to Graphs (#77)

Merged pull requests:

• Bug fixes (#80) (@richardreeve)

v0.4.21

Phylo v0.4.21

Diff since v0.4.20

Merged pull requests:

• fix plotting (#63) (@mkborregaard)
• Add plotting docs (#64) (@mkborregaard)
• Refactor docs (#65) (@mkborregaard)
• patches rebase issues (#66) (@mkborregaard)
• small doc fixes (#67) (@mkborregaard)

v0.4.20

Phylo v0.4.20

Diff since v0.4.19

Closed issues:

• Plot tree doesn't show the tips (#53)

Merged pull requests:

• restore tipannotations; fix #53 (#60) (@BenjaminDoran)