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Releases: ElisabethKugler/ZFVascularQuantification

v2.0.1 - User Feedback Integration

19 Jan 19:56
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Release after code changes from peer-reviewed publication, I2K workshop, and user feedback.

  • changes 17.10.2020

    • line 397 deselection of pointROI for TH/density/surface
    • minor GUI changes to make it more intuitive
    • closing edge tiff
    • line 563 "TH_template" to "template"
  • changes 26.10.2020

    • correct histogram count [allow 0 or 255 to be vascular; whichever is smaller]
  • changes 02.12.2020

    • FScale over-write issue; write selected input and output folder into Log;
    • only print the steps that were selected into log
    • more user feedback needed to decide whether to write MIPs into seperate folder;
    • ToDo Mac vs windows - Mac doesn't show "input folder" etc;
  • changes 15.08.2021 (Thanks to Nick Condon - Github comments)

    • file name input with and without space
    • line 197 - falsely included link to github
  • changes 19.01.2021 (Thanks to Guy Malkinson - pers comm)

    • line 197 - falsely included link to github
    • solved issue with downsampling after segmentation without ROI
    • 512x512 (x,y) downsampling was hard-coded > needs to be made user input

First Release ZFVascularQuantification

10 Aug 14:13
e4e139e
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Release includes code and workflow documentation for the preprint article "3D quantification of zebrafish cerebrovascular architecture by automated image analysis of light sheet fluorescence microscopy datasets" by Elisabeth C Kugler, James Frost, Vishmi Silva, Karen C Plant, Karishma Chhabria, Timothy James Chico, Paul Armitage (https://www.biorxiv.org/content/10.1101/2020.08.06.239905v1), as per 10082020.