v0.4.3

What's Changed

• Use cross-platform temp file and file opening utilities by @pkalita-lbl in #30

Full Changelog: v0.4.2...v0.4.3

v0.4.2

What's Changed

• README updates by @pkalita-lbl in #22
• Bump minimist from 1.2.5 to 1.2.6 by @dependabot in #19
• Don't rely on named exports from graphlib by @pkalita-lbl in #26
• Extend prefix mapping by @cmungall in #24

New Contributors

• @cmungall made their first contribution in #24

Full Changelog: v0.4.1...v0.4.2

v0.4.1

Fix bug where executable script was pointing to lib (which isn't published) instead of dist directory.

Full Changelog: v0.4.0...v0.4.1

v0.4.0

🚨 DO NOT INSTALL THIS VERSION FROM NPM 🚨

This version is a major reorganization of the repo. It is now designed to be installed via NPM with an executable called og2dot (as opposed to the old model of cloning the repo and directly executing the script og2dot.js). However there is a bug in this version that prevents the executable from running. Use v0.4.1 instead.

What's Changed

• Modernize repo by @pkalita-lbl in #18

New Contributors

• @pkalita-lbl made their first contribution in #18

Full Changelog: v0.3.0...v0.4.0

v0.3.0

What's Changed

• Bump handlebars from 3.0.6 to 3.0.7 by @dependabot in #6
• Bump mixin-deep from 1.3.1 to 1.3.2 by @dependabot in #8
• Bump lodash.merge from 4.6.1 to 4.6.2 by @dependabot in #7
• Bump npm from 6.8.0 to 6.13.4 by @dependabot in #9
• Bump npm from 6.13.4 to 6.14.6 by @dependabot in #10

New Contributors

• @dependabot made their first contribution in #6

Full Changelog: 0.2.2...v0.3.0

0.2.2 release: equivalence cliques

This new release allows for the nesting of equivalence cliques from either xrefs or equivalence axioms.

Starting with a defined set of predicates/properties (for example, the obo “xref” property, or an owl equivalentClasses declaration between two classes), it will transitively expand these until a maximal clique is found for each node. All such mutually connected nodes with then be visualized inside one of these cliques.

An example is shown below (Uberon (yellow) aligned with ZFA (black) and two Allen Brain Atlas ontologies (grey and pink); each ontology has its own color; any set of species-equivalent nodes are clustered together with a box drawn around them. isa=black, part_of=blue). Classes that are unique to a single ontology are shown without a bounding box.

0.1.3 release

• Nesting of equivalence cliques

0.1.2 release

• addition of stylesheets