update snap #149
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| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| if: "! contains(toJSON(github.event.commits.*.message), '[skip-check]')" | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| # - name: Query dependencies | |
| # run: | | |
| # install.packages('remotes') | |
| # saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| # writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| # shell: Rscript {0} | |
| # | |
| # - name: Cache R packages | |
| # if: runner.os != 'Windows' | |
| # uses: actions/cache@v1 | |
| # with: | |
| # path: ${{ env.R_LIBS_USER }} | |
| # key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| # restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install JAGS macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| rm '/usr/local/bin/gfortran' | |
| brew install jags | |
| - name: Download JAGS Windows | |
| if: runner.os == 'Windows' | |
| run: (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe') | |
| shell: powershell | |
| - name: Install JAGS Windows | |
| if: runner.os == 'Windows' | |
| run: C:\JAGS-4.3.1.exe /S | |
| shell: cmd | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")') | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| # - name: Install dependencies | |
| # run: | | |
| # remotes::install_deps(dependencies = TRUE) | |
| # remotes::install_cran("rcmdcheck") | |
| # shell: Rscript {0} | |
| # - name: Session info | |
| # run: | | |
| # options(width = 100) | |
| # pkgs <- installed.packages()[, "Package"] | |
| # sessioninfo::session_info(pkgs, include_base = TRUE) | |
| # shell: Rscript {0} | |
| # - name: Check | |
| # env: | |
| # _R_CHECK_CRAN_INCOMING_: false | |
| # _R_CHECK_FORCE_SUGGESTS_: false | |
| # _R_CHECK_SYSTEM_CLOCK_: false | |
| # IS_CHECK: true | |
| # run: | | |
| # os = .Platform$OS.type | |
| # if (os == "windows" & R.version$major == 3) {remotes::install_version("rjags", version = "4-10")} | |
| # jagshome = if (os == "windows") {readRegistry("SOFTWARE\\JAGS", maxdepth = 2, view = "32-bit")} | |
| # if (os == "windows"){Sys.setenv(JAGS_HOME = try(jagshome[["JAGS-4.3.0"]][["InstallDir"]]))} | |
| # rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), build_args = "--no-manual", error_on = "warning", check_dir = "check") | |
| # shell: Rscript {0} | |
| # - name: Show testthat output | |
| # if: always() | |
| # run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| # shell: bash | |
| # | |
| # - name: Upload check results | |
| # if: failure() | |
| # uses: actions/upload-artifact@main | |
| # with: | |
| # name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| # path: check |