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OMOP CDM Content deletion

This script is used to delete the content of certain columns in certan tables of OMOP CDM.

Required packages

  • sqlalchemy
  • psycopg2

Fill in the database information in the scrip:

  • db_host = "Your database host"
  • db_port = "Your port"
  • db_name = "Your database name"
  • db_user = "You admin name"
  • db_password = "Your admin password"

Run the scrip in Terminal using the following commond:

  • python omop-deletion-scrip.py

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Deletion of unwanted content from OMOP CDM

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