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Adding script for processing data dictionaries
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if [ $# -eq 0 ] | ||
then | ||
echo "Two arguments must be supplied: (1) The input directory containing data dictionaries, (2) The output directory." | ||
exit 1 | ||
fi | ||
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echo "Processing data dictionaries in $1 and sending output to $2" | ||
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curated=$1 | ||
outdir=$2 | ||
processingdir=$outdir/processing | ||
splitdictionaries=$outdir/splitdictionaries | ||
latestversions=$outdir/latestversions | ||
withsources=$outdir/withsources | ||
withdigests=$outdir/withdigests | ||
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mkdir $outdir | ||
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dd make-csv --in $curated --out $outdir/0-extracted | ||
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dd strip --in $outdir/0-extracted --out $outdir/1-stripped | ||
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dd collapse --in $outdir/1-stripped --out $outdir/2-collapsed --key-field-name question_name --key-field-regex "^([^\-]+)\-\d+" --key-field-regex-group 1 | ||
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dd fill-down --in $outdir/2-collapsed --out $outdir/3-filled --field-names survey_name,survey_version,"Section Header" | ||
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dd replace-field-names --in $outdir/3-filled --out $outdir/4-mapped | ||
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dd transform --in $outdir/4-mapped --out $outdir/5-normalized --lowercase --collapse-white-space --field-names required,variable_name,datatype,units | ||
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dd split --in $outdir/5-normalized --out $outdir/6-split --field-names survey_name | ||
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dd retain-max-rows --in $outdir/6-split --out $outdir/7-deduped --field-names survey_version | ||
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dd filter --in $outdir/7-deduped --out $outdir/8-non-blank-variable-names --field-value-filter variable_name=.+ | ||
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dd append-source --in $outdir/8-non-blank-variable-names --out $outdir/9-with-sources | ||
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dd append-digest --in $outdir/9-with-sources --out $outdir/10-with-digests --field-names variable_name,source_file,source_directory | ||
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dd merge --in $outdir/10-with-digests --out $outdir/merged.csv --distinct --sorted | ||
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# dd retain-fields --in $latestversions --out $outdir/variable_names --field-names variable_name,label | ||
# dd distinct --in $outidr/variable_names --out $outidr/variable_names | ||
# dd append-source --in $outdir/variable_names --out $outdir/variable_names | ||
# dd merge --in $outdir/variable_names --out $outdir/variable_names-summary.csv --sorted | ||
# | ||
# | ||
# dd retain-fields --in $withsources --out $outdir/datatypes --field-names datatype,source_file,source_directory | ||
# dd distinct --in $outdir/datatypes --out $outdir/datatypes | ||
# dd merge --in $outdir/datatypes --out $outdir/datatypes-summary.csv --distinct --sorted | ||
# | ||
# dd retain-fields --in $latestversions --out $outdir/units --field-names units,source_file,source_directory | ||
# dd distinct --in $outdir/units --out $outdir/units | ||
# dd merge --in $outdir/units --out $outdir/units-summary.csv --distinct --sorted | ||
# | ||
# dd retain-fields --in $latestversions --out $outdir/labels --field-names label,source_file,source_directory | ||
# dd merge --in $outdir/labels --out $outdir/labels-summary.csv --distinct --sorted | ||
# | ||
# dd retain-fields --in $latestversions --out $outdir/value-constraints --field-names value_constraints,source_directory | ||
# dd merge --in $outdir/value-constraints --out $outdir/value-constraints-summary.csv --distinct --sorted |