Oops, directory() flag is only for outputs.

TranslatorSRI · Mar 26, 2024 · 06ea75f · 06ea75f
1 parent 2993c7f
commit 06ea75f
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/snakefiles/publications.snakefile b/src/snakefiles/publications.snakefile
@@ -13,8 +13,8 @@ rule download_pubmed:
 rule generate_pubmed_concords:
     input:
         config['download_directory'] + '/PubMed/downloaded',
-        baseline_dir = directory(config['download_directory'] + '/PubMed/baseline'),
-        updatefiles_dir = directory(config['download_directory'] + '/PubMed/updatefiles'),
+        baseline_dir = config['download_directory'] + '/PubMed/baseline',
+        updatefiles_dir = config['download_directory'] + '/PubMed/updatefiles',
     output:
         titles_file = config['download_directory'] + '/PubMed/titles',
         status_file = config['download_directory'] + '/PubMed/statuses',