ATAC-DoubletDetector v1.1-beta

This release adds an additional option to force processing a bam file when the file is not recognized as coordinate sorted.

Additionally, mapping quality and max insert size thresholds can now bet set as optional parameters.
The default cell_id column has been changed to be the same as barcode (column index = 0), as the latest CellRangerATAC pipeline no longer assigns cell ids to cells and instead just provided barcodes as the unique identifiers.

Combined sites designating blacklist, segmental duplications and repetitive elements can be downloaded from the 1.0-beta release.