Add spell check workflow

.github/workflows/clang-format.yml

@@ -4,7 +4,14 @@ on:
   push:
     branches:
       - master
-      - "release/v[0-9].[0-9].[0-9]"
+      - 'release/v[0-9]+\.[0-9]+\.[0-9]+'
+      - "feature/**"
+  pull_request:
+    types:
+      - opened
+      - synchronize
+    branches:
+      - 'release/v[0-9]+\.[0-9]+\.[0-9]+'
       - "feature/**"
   # Manual trigger
   workflow_dispatch:

.github/workflows/spell-check.yml

@@ -0,0 +1,28 @@
+name: Spell check
+
+on:
+  push:
+    branches:
+      - master
+      - 'release/v[0-9]+\.[0-9]+\.[0-9]+'
+      - "feature/**"
+  pull_request:
+    types:
+      - opened
+      - synchronize
+    branches:
+      - 'release/v[0-9]+\.[0-9]+\.[0-9]+'
+      - "feature/**"
+  # Manual trigger
+  workflow_dispatch:
+
+jobs:
+  check:
+    name: Codespell
+    runs-on: ubuntu-22.04
+    steps:
+      - uses: actions/checkout@v4
+      - uses: codespell-project/actions-codespell@v2
+        with:
+          check_filenames: true
+          skip: "**/*.svg"

CMakeLists.txt

@@ -48,7 +48,7 @@ if(NOT DEFINED LIB_PATH)
   message(FATAL_ERROR
     "Path to dependencies must be specified."
     " All dependencies must be available in the same directory."
-    " Use -DLIB_PATH=/path/to/dependenices to set this path."
+    " Use -DLIB_PATH=/path/to/dependencies to set this path."
     )
 else()
   list(APPEND CMAKE_PREFIX_PATH ${LIB_PATH})

README.md

@@ -1,11 +1,15 @@
 # ChemTools
+
 ChemTools is a collection of thermochemical tools for certain chemical and combustion applications.
 
 ## Status
+
 This project is currently in the early stages of development. All the necessary infrastructure is in place though. The work on the core applications is in progress.
 
 ## Description
+
 Ultimately, the following applications will become available:
+
 - Chemical reactor with one or two properties held constant:
   - pressure,
   - volume,
@@ -14,31 +18,36 @@ Ultimately, the following applications will become available:
 - Chemical reactor with user-defined Python scripts providing functions for:
   - the volume and its time derivative as a function of time, or
   - the temperature and pressure as a function of time.
-- One-dimensional premixed flames. 
+- One-dimensional premixed flames.
 - Flamelet library generator using:
   - the β-PDF approach, or
   - the Presumed Mapping Function approach.
 
 ## Language, build configuration and testing
+
 ChemTools:
+
 - is written in C++14,
 - has CMake support, and
 - includes automated unit tests.
 
 ## How to build
+
 - To build the code:
   - mkdir build && cd build
-  - cmake -DLIB_PATH=/path/to/dependcies /path/to//ChemTools/
+  - cmake -DLIB_PATH=/path/to/dependencies /path/to//ChemTools/
 - To build the tests (in-source possible for now because some tests use relative paths):
   - cd path/to//ChemTools/
   - mkdir build
-  - cmake -DLIB_PATH=/path/to/dependcies -DTEST_VERBOSE=ON ../tests
-Notes:
+  - cmake -DLIB_PATH=/path/to/dependencies -DTEST_VERBOSE=ON ../tests
+    Notes:
 - Option LIB_PATH adds the specified path to CMAKE_PREFIX_PATH. Please refer to the next section for a complete list of dependencies.
 - Option TEST_VERBOSE is used to log some tests results to standard output. By default it is set to OFF.
 
 ## Dependencies
+
 ChemTools relies on a number of excellent third-party libraries:
+
 - [Cantera](https://github.com/Cantera/cantera) for the computation of thermodynamic and transport properties, and chemical kinetics,
 - [Sundials](https://github.com/LLNL/sundials) for the numerical solution of systems of ordinary differential equations,
 - [eigen](https://gitlab.com/libeigen/eigen) for numerical linear algebra computations,
@@ -52,10 +61,13 @@ ChemTools relies on a number of excellent third-party libraries:
 - various Boost libraries.
 
 ## Platforms
+
 Chemtools is developed and tested under Linux. Build tested with GCC versions 7.3.0 and 11.2.0 and CMake version 3.20.2.
 
 ## Documentation
+
 Documentation will be made available as soon some basic applications are published.
 
 ## License
+
 ChemTools is distributed under the MIT license.

include/embedded_python/helper.hpp

@@ -10,7 +10,7 @@ namespace CppPy
 {
 
   /*
-     Initialises and finalises the Python interprete
+     Initialises and finalises the Python interpreter
      When needed, a single instance should be created during initialisation
   */
 

include/input/parser.hpp

@@ -15,7 +15,7 @@ namespace Input
     // YAML parser
     void Parse();
 
-    // vaildation of parsed input
+    // validation of parsed input
     void Validate() const;
 
   public:

include/results/hdf5_writer.hpp

@@ -36,7 +36,7 @@ namespace Results
     // opens the results file
     void OpenFile();
 
-    // creates gropus of registered variables
+    // creates groups of registered variables
     void CreateGroups();
 
     // creates scalar datasets in groups

include/results/observer.hpp

@@ -21,7 +21,7 @@ namespace Results
     virtual void Update(class Subject&) = 0;
   };
 
-  // Meta of registerd variables
+  // Meta of registered variables
   class Meta
   {
   public:

scripts/dependencies_installer/BoostInstaller.psm1

@@ -67,7 +67,7 @@ class BoostInstaller {
         }
     }
 
-    hidden [void] Downlaod() {
+    hidden [void] Download() {
         $VersionUnderScore = $this.Tag.Replace('.', '_')
         $this.Stem = $this.Name + '_' + $VersionUnderScore
         $FileName = $this.Stem + ($Global:IsLinux ? '.tar.gz' : '.zip')
@@ -108,7 +108,7 @@ class BoostInstaller {
         Start-Process -FilePath ('./bootstrap' + ($Global:IsLinux ? '.sh' : '.bat')) -Wait -NoNewWindow
         $ExitCode = $LASTEXITCODE
         if ( $ExitCode -ne 0 ) {
-            throw ('Failed to boostrap boost.')
+            throw ('Failed to bootstrap boost.')
         }
         Pop-Location
     }
@@ -148,7 +148,7 @@ class BoostInstaller {
     [void] Run() {
         if ($this.DoInstall) {
             Utilities\PrintDecoratedMessage $this.Name "Start"
-            $this.Downlaod()
+            $this.Download()
             $this.Extract()
             $this.Bootstrap()
             $this.Install()

scripts/dependencies_installer/InstallDependencies.ps1

@@ -293,7 +293,7 @@ catch {
 }
 
 Write-Host ( `
-        "`nAll dependncies are now installed!`n" `
+        "`nAll dependencies are now installed!`n" `
         + "`nYou must now either:`n" `
         + (" - add {0} to your path before building, or`n" -f $Global:InstallDir) `
         + (" - configure the build with -DCMAKE_PREFIX_PATH={0}." -f $Global:InstallDir) `

src/input_parser.cpp

@@ -272,7 +272,7 @@ namespace Input
         {
           throw std::runtime_error(fmt::format("Input error: found invalid species: [{}].\n", invalid_species));
         }
-    } // existance scope
+    } // existence scope
 
     // check if species are positive
     {

src/results/hdf5_writer.cpp

@@ -139,7 +139,7 @@ namespace Results
   void HDF5Writer::CreateGroups()
   {
     std::vector<Meta::Scalar> const& scalars = subject.results_meta.scalars;
-    // extract unique group names and and cerate groups
+    // extract unique group names and and create groups
     std::unordered_set<std::string> unique_groups;
     // scalar
     for (auto it_scalars = scalars.begin(); it_scalars != scalars.end(); ++it_scalars)

src/sundials/cvode/interface.cpp

@@ -246,7 +246,7 @@ namespace SUNDIALS
         }
 
       // initialize the integrator memory and specify the user's
-      // right hand side function in u'= f(t,u), the inital time,
+      // right hand side function in u'= f(t,u), the initial time,
       // and the initial dependent variable vector u
       ret_code = CVodeInit(memory,
                            Client::RightHandSideCallback,
@@ -399,7 +399,7 @@ namespace SUNDIALS
           return ret_code;
         }
 
-      // set the maximum number of nonlinear iteartions
+      // set the maximum number of nonlinear iterations
       ret_code = CVodeSetMaxNonlinIters(memory, solver_ctrl.max_nonlin_iters);
       if (ret_code != CV_SUCCESS)
         {
@@ -449,7 +449,7 @@ namespace SUNDIALS
        This method returns a success, warning or failure code to the client code.
        The client code must:
        - decide what to do in case of failure
-       - assess the impact of warnings when they occurr
+       - assess the impact of warnings when they occur
     */
     int IStrategy::Integrate(realtype const time_target)
     {

tests/CMakeLists.txt

@@ -60,7 +60,7 @@ if(NOT DEFINED LIB_PATH)
   message(FATAL_ERROR
     "Path to dependencies must be specified."
     " All dependencies must be available in the same directory."
-    " Use -DLIB_PATH=/path/to/dependenices to set this path."
+    " Use -DLIB_PATH=/path/to/dependencies to set this path."
     )
 else()
   list(APPEND CMAKE_PREFIX_PATH ${LIB_PATH})