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🎇 SCelVis - web-based visualization of single-cell data. ➡️ ➡️ Demo ➡️➡️

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SCelVis: Easy Single-Cell Visualization

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Documentation

The SCelVis documentation at ReadTheDocs.org contains comprehensive information including a Tutorial.

Movie

docs_manual/figures/scelvis_movie.gif

Installation

You can install with Pip and Bioconda or run directly via Docker.

$ pip install scelvis
# OR
$ conda install scelvis
# OR
$ docker run ghcr.io/bihealth/scelvis:0.8.8-0 scelvis --help

Look up the latest version (instead of 0.8.8-0 to use at here)

Building Docker Image

  1. Push changes to Github (we need a [git tree-ish](https://stackoverflow.com/questions/4044368/what-does-tree-ish-mean-in-git), so a tag works as well as a feature branch).
  2. Call GIT_TAG=tag-or-branch bash docker/build-docker.sh.
  3. Run with docker run ghcr.io/bihealth/scelvis:[version]-0.
  4. Push with docker push ghcr.io/bihealth/scelvis:[version]-0.

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🎇 SCelVis - web-based visualization of single-cell data. ➡️ ➡️ Demo ➡️➡️

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