Another implementation of Venn diagrams in ggplot2. Simple functions to generate 2-4 way Venn diagrams using ‘ggplot2’ with minimal dependencies.
Takes the good parts of ggvenn and ggVennDiagram.
library(ggplot2)
library(ggvd)# make some fake data
generate_gene_names <- function(n) {
gene_letters <- do.call(
paste0,
replicate(3, sample(LETTERS, n, replace = TRUE), simplify = FALSE)
)
paste0(gene_letters, sample.int(9, n, replace = TRUE))
}
genes <- generate_gene_names(n = 2000)# input for venn should be a list
set.seed(42)
results <- list(
"Sample 1" = sample(genes, 1651),
"Sample 2" = sample(genes, 687),
"Sample 3" = sample(genes, 872),
"Sample 4" = sample(genes, 712)
)# prepare_venn takes a list and outputs a data.frame in the correct format
venn2 <- prepare_venn(results[1:2], fill = c("blue", "yellow"))
venn3 <- prepare_venn(results[1:3], fill = c("blue", "yellow", "green"))
venn4 <- prepare_venn(results, fill = c("blue", "yellow", "green", "red"))## 2 way Venn
# discrete
ggplot() +
geom_venn(aes(set_name = set_name, elements = elements, fill = fill),
data = venn2, type = "discrete", set_total = TRUE) +
scale_fill_identity() +
theme_void()
# continuous
ggplot() +
geom_venn(aes(set_name = set_name, elements = elements, fill = count),
data = venn2, type = "continuous", set_total = TRUE) +
scale_fill_gradient(low = "white", high = "red") +
theme_void()
## 3 way Venn
# discrete
ggplot() +
geom_venn(aes(set_name = set_name, elements = elements, fill = fill),
data = venn3, type = "discrete", set_total = TRUE) +
scale_fill_identity() +
theme_void()
# continuous
ggplot() +
geom_venn(aes(set_name = set_name, elements = elements, fill = count),
data = venn3, type = "continuous", set_total = TRUE) +
scale_fill_gradient(low = "white", high = "red") +
theme_void()
## 4 way Venn
# discrete
ggplot() +
geom_venn(aes(set_name = set_name, elements = elements, fill = fill),
data = venn4, type = "discrete", set_total = TRUE) +
scale_fill_identity() +
theme_void()
# continuous
ggplot() +
geom_venn(aes(set_name = set_name, elements = elements, fill = count),
data = venn4, type = "continuous", set_total = TRUE) +
scale_fill_gradient(low = "white", high = "red") +
theme_void()
