Bioinfo Essentials @ I2BC

Everything you need to know while working as a bioinformatician at I2BC: documentations, short videos, Twitter threads, etc.
Maybe you don't master them all, but you should know they exist!

TOOLS EVERY BIOINFORMATICIAN SHOULD KNOW

Using the I2BC cluster

https://intranet.i2bc.paris-saclay.fr/intranet/sics/Main/Cluster (Intranet, needs multipass)

Connecting to the I2BC cluster from home (with a non I2BC station)
ssh firstname.lastname@passerelle.i2bc.paris-saclay.fr
enter passwd then :
ssh firstname.lastname@i2bc-cluster.calcul.i2bc.paris-saclay.fr
you’re on the cluster

git/github

https://www.atlassian.com/git/tutorials
Git Tutorial for Beginners (1 hour video): https://t.co/MDYXnnA0DC

Unix command line

The Unix Workbench, a complete tuto with many exercices: https://seankross.com/the-unix-workbench/

BioNumPy

https://twitter.com/razoralign/status/1606817896491274242?s=20&t=4VB9jJ-sHO3x3Z7jMqXMNQ https://www.biorxiv.org/content/10.1101/2022.12.21.521373v1

Jupyter notebooks

https://twitter.com/pyquantnews/status/1562957339543875589
Configure Jupyter in visual Studio Code: https://code.visualstudio.com/docs/datascience/jupyter-notebooks

Zotero

https://twitter.com/MushtaqBilalPhD/status/1562709453996060673