helm: add configurable liveness&readiness probes for master topology-updater and worker #1801

omerap12 · 2024-07-18T17:33:07Z

Fixes: #1730
The following values.yaml:

master:
  enable: true
  args: []
  config: ### <NFD-MASTER-CONF-START-DO-NOT-REMOVE>
    # noPublish: false
    # autoDefaultNs: true
    # extraLabelNs: ["added.ns.io","added.kubernets.io"]
    # denyLabelNs: ["denied.ns.io","denied.kubernetes.io"]
    # resourceLabels: ["vendor-1.com/feature-1","vendor-2.io/feature-2"]
    # enableTaints: false
    # labelWhiteList: "foo"
    # resyncPeriod: "2h"
    # klog:
    #    addDirHeader: false
    #    alsologtostderr: false
    #    logBacktraceAt:
    #    logtostderr: true
    #    skipHeaders: false
    #    stderrthreshold: 2
    #    v: 0
    #    vmodule:
    ##   NOTE: the following options are not dynamically run-time configurable
    ##         and require a nfd-master restart to take effect after being changed
    #    logDir:
    #    logFile:
    #    logFileMaxSize: 1800
    #    skipLogHeaders: false
    # leaderElection:
    #   leaseDuration: 15s
    #   # this value has to be lower than leaseDuration and greater than retryPeriod*1.2
    #   renewDeadline: 10s
    #   # this value has to be greater than 0
    #   retryPeriod: 2s
    # nfdApiParallelism: 10
  ### <NFD-MASTER-CONF-END-DO-NOT-REMOVE>
  # The TCP port that nfd-master listens for incoming requests. Default: 8080
  # Deprecated this parameter is related to the deprecated gRPC API and will
  # be removed with it in a future release
  port: 8080
  metricsPort: 8081
  instance:
  featureApi:
  resyncPeriod:
  denyLabelNs: []
  extraLabelNs: []
  resourceLabels: []
  enableTaints: false
  crdController: null
  featureRulesController: null
  nfdApiParallelism: null
  deploymentAnnotations: {}
  replicaCount: 1

  podSecurityContext: {}
    # fsGroup: 2000

  securityContext:
    allowPrivilegeEscalation: false
    capabilities:
      drop: [ "ALL" ]
    readOnlyRootFilesystem: true
    runAsNonRoot: true
    # runAsUser: 1000

  serviceAccount:
    # Specifies whether a service account should be created
    create: true
    # Annotations to add to the service account
    annotations: {}
    # The name of the service account to use.
    # If not set and create is true, a name is generated using the fullname template
    name:

  # specify how many old ReplicaSets for the Deployment to retain.
  revisionHistoryLimit:

  rbac:
    create: true

  service:
    type: ClusterIP
    port: 8080

  resources:
    limits:
      memory: 4Gi
    requests:
      cpu: 100m
      # You may want to use the same value for `requests.memory` and `limits.memory`. The “requests” value affects scheduling to accommodate pods on nodes.
      # If there is a large difference between “requests” and “limits” and nodes experience memory pressure, the kernel may invoke
      # the OOM Killer, even if the memory does not exceed the “limits” threshold. This can cause unexpected pod evictions. Memory
      # cannot be compressed and once allocated to a pod, it can only be reclaimed by killing the pod.
      # Natan Yellin 22/09/2022 https://home.robusta.dev/blog/kubernetes-memory-limit
      memory: 128Mi

  nodeSelector: {}

  tolerations:
  - key: "node-role.kubernetes.io/master"
    operator: "Equal"
    value: ""
    effect: "NoSchedule"
  - key: "node-role.kubernetes.io/control-plane"
    operator: "Equal"
    value: ""
    effect: "NoSchedule"

  annotations: {}

  affinity:
    nodeAffinity:
      preferredDuringSchedulingIgnoredDuringExecution:
        - weight: 1
          preference:
            matchExpressions:
              - key: "node-role.kubernetes.io/master"
                operator: In
                values: [""]
        - weight: 1
          preference:
            matchExpressions:
              - key: "node-role.kubernetes.io/control-plane"
                operator: In
                values: [""]
                
  livenessProbe:
    grpc:
      port: 8082
    initialDelaySeconds: 10
    periodSeconds: 10
  readinessProbe:
    grpc:
      port: 8082
    initialDelaySeconds: 5
    periodSeconds: 10
    failureThreshold: 10

Will generate:

---
# Source: node-feature-discovery/templates/master.yaml
apiVersion: apps/v1
kind: Deployment
metadata:
  name:  release-name-node-feature-discovery-master
  namespace: default
  labels:
    helm.sh/chart: node-feature-discovery-0.2.1
    app.kubernetes.io/name: node-feature-discovery
    app.kubernetes.io/instance: release-name
    app.kubernetes.io/version: "master"
    app.kubernetes.io/managed-by: Helm
    role: master
spec:
  replicas: 1
  revisionHistoryLimit: 
  selector:
    matchLabels:
      app.kubernetes.io/name: node-feature-discovery
      app.kubernetes.io/instance: release-name
      role: master
  template:
    metadata:
      labels:
        app.kubernetes.io/name: node-feature-discovery
        app.kubernetes.io/instance: release-name
        role: master
    spec:
      serviceAccountName: release-name-node-feature-discovery
      enableServiceLinks: false
      securityContext:
        {}
      containers:
        - name: master
          securityContext:
            allowPrivilegeEscalation: false
            capabilities:
              drop:
              - ALL
            readOnlyRootFilesystem: true
            runAsNonRoot: true
          image: "gcr.io/k8s-staging-nfd/node-feature-discovery:master"
          imagePullPolicy: Always
          livenessProbe:
            failureThreshold: 10
            grpc:
              port: 8082
            initialDelaySeconds: 5
            periodSeconds: 10
          readinessProbe:
            failureThreshold: 10
            grpc:
              port: 8082
            initialDelaySeconds: 5
            periodSeconds: 10
          ports:
          - containerPort: 8080
            name: grpc
          - containerPort: 8081
            name: metrics
          env:
          - name: NODE_NAME
            valueFrom:
              fieldRef:
                fieldPath: spec.nodeName
          command:
            - "nfd-master"
          resources:
            limits:
              memory: 4Gi
            requests:
              cpu: 100m
              memory: 128Mi
          args:
            ## By default, disable crd controller for other than the default instances
            - "-crd-controller=true"
            # Go over featureGates and add the feature-gate flag
            - "-feature-gates=NodeFeatureAPI=true"
            - "-feature-gates=NodeFeatureGroupAPI=false"
            - "-metrics=8081"
          volumeMounts:
            - name: nfd-master-conf
              mountPath: "/etc/kubernetes/node-feature-discovery"
              readOnly: true
      volumes:
        - name: nfd-master-conf
          configMap:
            name: release-name-node-feature-discovery-master-conf
            items:
              - key: nfd-master.conf
                path: nfd-master.conf
      affinity:
        nodeAffinity:
          preferredDuringSchedulingIgnoredDuringExecution:
          - preference:
              matchExpressions:
              - key: node-role.kubernetes.io/master
                operator: In
                values:
                - ""
            weight: 1
          - preference:
              matchExpressions:
              - key: node-role.kubernetes.io/control-plane
                operator: In
                values:
                - ""
            weight: 1
      tolerations:
        - effect: NoSchedule
          key: node-role.kubernetes.io/master
          operator: Equal
          value: ""
        - effect: NoSchedule
          key: node-role.kubernetes.io/control-plane
          operator: Equal
          value: ""
---
# Source: node-feature-discovery/templates/worker.yaml
apiVersion: apps/v1
kind: DaemonSet
metadata:
  name:  release-name-node-feature-discovery-worker
  namespace: default
  labels:
    helm.sh/chart: node-feature-discovery-0.2.1
    app.kubernetes.io/name: node-feature-discovery
    app.kubernetes.io/instance: release-name
    app.kubernetes.io/version: "master"
    app.kubernetes.io/managed-by: Helm
    role: worker
spec:
  revisionHistoryLimit: 
  selector:
    matchLabels:
      app.kubernetes.io/name: node-feature-discovery
      app.kubernetes.io/instance: release-name
      role: worker
  template:
    metadata:
      labels:
        app.kubernetes.io/name: node-feature-discovery
        app.kubernetes.io/instance: release-name
        role: worker
    spec:
      dnsPolicy: ClusterFirstWithHostNet
      serviceAccountName: release-name-node-feature-discovery-worker
      securityContext:
        {}
      containers:
      - name: worker
        securityContext:
            allowPrivilegeEscalation: false
            capabilities:
              drop:
              - ALL
            readOnlyRootFilesystem: true
            runAsNonRoot: true
        image: "gcr.io/k8s-staging-nfd/node-feature-discovery:master"
        imagePullPolicy: Always
        livenessProbe:
            grpc:
              port: 8082
            initialDelaySeconds: 10
        readinessProbe:
            failureThreshold: 10
            grpc:
              port: 8082
            initialDelaySeconds: 5
        env:
        - name: NODE_NAME
          valueFrom:
            fieldRef:
              fieldPath: spec.nodeName
        - name: POD_NAME
          valueFrom:
            fieldRef:
              fieldPath: metadata.name
        - name: POD_UID
          valueFrom:
            fieldRef:
              fieldPath: metadata.uid
        resources:
            limits:
              memory: 512Mi
            requests:
              cpu: 5m
              memory: 64Mi
        command:
        - "nfd-worker"
        args:
# Go over featureGate and add the feature-gate flag
        - "-feature-gates=NodeFeatureAPI=true"
        - "-feature-gates=NodeFeatureGroupAPI=false"
        - "-metrics=8081"
        ports:
          - name: metrics
            containerPort: 8081
        volumeMounts:
        - name: host-boot
          mountPath: "/host-boot"
          readOnly: true
        - name: host-os-release
          mountPath: "/host-etc/os-release"
          readOnly: true
        - name: host-sys
          mountPath: "/host-sys"
          readOnly: true
        - name: host-usr-lib
          mountPath: "/host-usr/lib"
          readOnly: true
        - name: host-lib
          mountPath: "/host-lib"
          readOnly: true
        - name: host-proc-swaps
          mountPath: "/host-proc/swaps"
          readOnly: true
        - name: source-d
          mountPath: "/etc/kubernetes/node-feature-discovery/source.d/"
          readOnly: true
        - name: features-d
          mountPath: "/etc/kubernetes/node-feature-discovery/features.d/"
          readOnly: true
        - name: nfd-worker-conf
          mountPath: "/etc/kubernetes/node-feature-discovery"
          readOnly: true
      volumes:
        - name: host-boot
          hostPath:
            path: "/boot"
        - name: host-os-release
          hostPath:
            path: "/etc/os-release"
        - name: host-sys
          hostPath:
            path: "/sys"
        - name: host-usr-lib
          hostPath:
            path: "/usr/lib"
        - name: host-lib
          hostPath:
            path: "/lib"
        - name: host-proc-swaps
          hostPath:
            path: "/proc/swaps"
        - name: source-d
          hostPath:
            path: "/etc/kubernetes/node-feature-discovery/source.d/"
        - name: features-d
          hostPath:
            path: "/etc/kubernetes/node-feature-discovery/features.d/"
        - name: nfd-worker-conf
          configMap:
            name: release-name-node-feature-discovery-worker-conf
            items:
              - key: nfd-worker.conf
                path: nfd-worker.conf
---
# Source: node-feature-discovery/templates/topologyupdater.yaml
apiVersion: apps/v1
kind: DaemonSet
metadata:
  name: release-name-node-feature-discovery-topology-updater
  namespace: default
  labels:
    helm.sh/chart: node-feature-discovery-0.2.1
    app.kubernetes.io/name: node-feature-discovery
    app.kubernetes.io/instance: release-name
    app.kubernetes.io/version: "master"
    app.kubernetes.io/managed-by: Helm
    role: topology-updater
spec:
  revisionHistoryLimit: 
  selector:
    matchLabels:
      app.kubernetes.io/name: node-feature-discovery
      app.kubernetes.io/instance: release-name
      role: topology-updater
  template:
    metadata:
      labels:
        app.kubernetes.io/name: node-feature-discovery
        app.kubernetes.io/instance: release-name
        role: topology-updater
    spec:
      serviceAccountName: release-name-node-feature-discovery-topology-updater
      dnsPolicy: ClusterFirstWithHostNet
      securityContext:
        {}
      containers:
      - name: topology-updater
        image: "gcr.io/k8s-staging-nfd/node-feature-discovery:master"
        imagePullPolicy: "Always"
        livenessProbe:
          grpc:
            port: 8082
          initialDelaySeconds: 10
        readinessProbe:
          failureThreshold: 10
          grpc:
            port: 8082
          initialDelaySeconds: 5
        env:
        - name: NODE_NAME
          valueFrom:
            fieldRef:
              fieldPath: spec.nodeName
        - name: NODE_ADDRESS
          valueFrom:
            fieldRef:
              fieldPath: status.hostIP
        command:
          - "nfd-topology-updater"
        args:
          - "-podresources-socket=/host-var/lib/kubelet-podresources/kubelet.sock"
          - "-sleep-interval=60s"
          - "-watch-namespace=*"
          - -metrics=8081
        ports:
          - name: metrics
            containerPort: 8081
        volumeMounts:
        - name: kubelet-podresources-sock
          mountPath: /host-var/lib/kubelet-podresources/kubelet.sock
        - name: host-sys
          mountPath: /host-sys
        - name: kubelet-state-files
          mountPath: /host-var/lib/kubelet
          readOnly: true
        - name: nfd-topology-updater-conf
          mountPath: "/etc/kubernetes/node-feature-discovery"
          readOnly: true

        resources:
            limits:
              memory: 60Mi
            requests:
              cpu: 50m
              memory: 40Mi
        securityContext:
            allowPrivilegeEscalation: false
            capabilities:
              drop:
              - ALL
            readOnlyRootFilesystem: true
            runAsUser: 0
      volumes:
      - name: host-sys
        hostPath:
          path: "/sys"
      - name: kubelet-podresources-sock
        hostPath:
          path: /var/lib/kubelet/pod-resources/kubelet.sock
      - name: kubelet-state-files
        hostPath:
          path: /var/lib/kubelet
      - name: nfd-topology-updater-conf
        configMap:
          name: release-name-node-feature-discovery-topology-updater-conf
          items:
            - key: nfd-topology-updater.conf
              path: nfd-topology-updater.conf

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marquiz

Thanks @omerap12 for the patch.

In addition to nfd-master, we should also add support for nfd-master and nfd-topology-updater.

docs/deployment/helm.md

marquiz · 2024-07-19T05:42:40Z

@ArangoGutierrez you were yearning for this, please verify and report back 😊

/assign @ArangoGutierrez

omerap12 · 2024-07-19T09:08:18Z

nfd-topology-updater.

sure. do you want it in the same PR?

marquiz · 2024-07-19T10:21:14Z

sure. do you want it in the same PR?

Yes, enable them all at the same time

docs/deployment/helm.md

omerap12 · 2024-07-19T12:53:12Z

@marquiz do we want to add failureThreshold to the livenessProbes as well?

marquiz

do we want to add failureThreshold to the livenessProbes as well?

You could add it as a commented out entry in the values.yaml. Let's not change any defaults in this PR, though

deployment/helm/node-feature-discovery/values.yaml

marquiz

Could you add support for nfd-worker, too, to make this comprehensive and consistent?

Also, adjust the commit message (and the PR title) accordingly, e.g. helm: add support for configuring liveness and readiness probes or smth

docs/deployment/helm.md

marquiz

Now that we're on it, suggest rewording/re-spelling the commit message (and PR title)

helm: add configurable liveness&readiness probes for master topology-updater and worker

EDIT: *configurable

docs/deployment/helm.md

omerap12 · 2024-07-22T12:18:19Z

Added some alignment, maybe that ok? @marquiz

ArangoGutierrez · 2024-07-22T14:25:47Z

Added some alignment, maybe that ok? @marquiz

Looks fine now to me, let's wait for @marquiz, and we can move forward with this PR

deployment/helm/node-feature-discovery/templates/master.yaml

marquiz · 2024-07-22T18:44:46Z

Added some alignment, maybe that ok? @marquiz

Looks good to me 👍

…updater and worker Signed-off-by: Omer Aplatony <omerap12@gmail.com>

marquiz

Thank you @omerap12 for the persistence on this. Nice job, looks good to me
/cherry-pick release-0.16

marquiz · 2024-07-23T11:22:34Z

ping @ArangoGutierrez

/cherry-pick release-0.16

k8s-infra-cherrypick-robot · 2024-07-23T11:22:37Z

@marquiz: once the present PR merges, I will cherry-pick it on top of release-0.16 in a new PR and assign it to you.

In response to this:

ping @ArangoGutierrez

/cherry-pick release-0.16

Instructions for interacting with me using PR comments are available here. If you have questions or suggestions related to my behavior, please file an issue against the kubernetes-sigs/prow repository.

ArangoGutierrez

/lgtm

k8s-ci-robot · 2024-07-23T12:48:18Z

LGTM label has been added.

Git tree hash: 6b763b4390cc42d8e7b658b9b688132da1e37658

k8s-ci-robot · 2024-07-23T12:48:19Z

[APPROVALNOTIFIER] This PR is APPROVED

This pull-request has been approved by: ArangoGutierrez, marquiz, omerap12

The full list of commands accepted by this bot can be found here.

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Needs approval from an approver in each of these files:

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k8s-infra-cherrypick-robot · 2024-07-23T12:50:58Z

@marquiz: #1801 failed to apply on top of branch "release-0.16":

Applying: helm: add configurable liveness&readiness probes for master topology-updater and worker
.git/rebase-apply/patch:86: trailing whitespace.
                
.git/rebase-apply/patch:142: trailing whitespace.
  
warning: 2 lines add whitespace errors.
Using index info to reconstruct a base tree...
M	deployment/helm/node-feature-discovery/templates/master.yaml
M	deployment/helm/node-feature-discovery/templates/topologyupdater.yaml
M	deployment/helm/node-feature-discovery/templates/worker.yaml
M	deployment/helm/node-feature-discovery/values.yaml
M	docs/deployment/helm.md
Falling back to patching base and 3-way merge...
Auto-merging docs/deployment/helm.md
CONFLICT (content): Merge conflict in docs/deployment/helm.md
Auto-merging deployment/helm/node-feature-discovery/values.yaml
Auto-merging deployment/helm/node-feature-discovery/templates/worker.yaml
Auto-merging deployment/helm/node-feature-discovery/templates/topologyupdater.yaml
Auto-merging deployment/helm/node-feature-discovery/templates/master.yaml
error: Failed to merge in the changes.
hint: Use 'git am --show-current-patch=diff' to see the failed patch
Patch failed at 0001 helm: add configurable liveness&readiness probes for master topology-updater and worker
When you have resolved this problem, run "git am --continue".
If you prefer to skip this patch, run "git am --skip" instead.
To restore the original branch and stop patching, run "git am --abort".

In response to this:

ping @ArangoGutierrez

/cherry-pick release-0.16

Instructions for interacting with me using PR comments are available here. If you have questions or suggestions related to my behavior, please file an issue against the kubernetes-sigs/prow repository.

marquiz · 2024-07-23T13:43:54Z

Cherry-picked in #1808

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Release v0.16.4 #1800

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omerap12 changed the title ~~Add liveness&readiness probes for NFD master~~ helm: add liveness&readiness probes for nfd master,topologyUpdater and nfd worker Jul 22, 2024

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helm: add configurable liveness&readiness probes for master topology-…

b2222e2

…updater and worker Signed-off-by: Omer Aplatony <omerap12@gmail.com>

omerap12 force-pushed the issue_1730 branch from c861a4a to b2222e2 Compare July 22, 2024 18:54

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k8s-ci-robot merged commit 493aa0c into kubernetes-sigs:master Jul 23, 2024
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helm: add configurable liveness&readiness probes for master topology-updater and worker #1801

helm: add configurable liveness&readiness probes for master topology-updater and worker #1801

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helm: add configurable liveness&readiness probes for master topology-updater and worker #1801

helm: add configurable liveness&readiness probes for master topology-updater and worker #1801

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omerap12 commented Jul 18, 2024 • edited Loading

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✅ Deploy Preview for kubernetes-sigs-nfd ready!

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omerap12 commented Jul 18, 2024 •

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