Community repositories that originated in the Mirny lab and were transferred to Open Chromosome Collective, Open2C.
- cooler: a cool place to store your Hi-C
- cooltools: the tools for your .cool's (community Hi-C data analysis library)
- pairtools: CLI tools to process mapped Hi-C data
- distiller: a modular Hi-C mapping pipeline
- polychrom: polymer simulations of chromosomes
- bioframe: pandas utilities for tab-delimited and other genomic data files
We continue to develop them as open source projects with a community of labs and researchers.