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Adding and simplifying MaskPrimers options #344

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Adding and simplifying MaskPrimers options #344

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Commits on Jul 14, 2024

  1. also store unproductive seqs

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    ggabernet committed Jul 14, 2024
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  2. make unproductive optional

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    ggabernet committed Jul 14, 2024
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Commits on Jul 17, 2024

  1. fix cregion primer annotation

    @ggabernet
    ggabernet committed Jul 17, 2024
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Commits on Jul 22, 2024

  1. Merge branch 'nf-core:dev' into dev

    @ggabernet
    ggabernet authored Jul 22, 2024
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Commits on Aug 19, 2024

  1. Merge branch 'dev' of https://github.com/ggabernet/nf-core-airrflow i… 

    …nto dev
    @ggabernet
    ggabernet committed Aug 19, 2024
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  2. Merge branch 'dev' of https://github.com/ggabernet/nf-core-airrflow i… 

    …nto dev
    @ggabernet
    ggabernet committed Aug 19, 2024
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  3. simplify maskprimers score

    @ggabernet
    ggabernet committed Aug 19, 2024
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  4. do not save presto intermediate fastq

    @ggabernet
    ggabernet committed Aug 19, 2024
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Commits on Aug 20, 2024

  1. add maskprimers extract option

    @ggabernet
    ggabernet committed Aug 20, 2024
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  2. update changelog

    @ggabernet
    ggabernet committed Aug 20, 2024
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  3. update modules config

    @ggabernet
    ggabernet committed Aug 20, 2024
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  4. implement pairseq for clustersets

    @ggabernet
    ggabernet committed Aug 20, 2024
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  5. update modules.config

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    ggabernet committed Aug 20, 2024
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Commits on Aug 21, 2024

  1. add buildconsensus extract pairseq extract

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    ggabernet committed Aug 21, 2024
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  2. Merge branch 'clustersets' into dev

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    ggabernet committed Aug 21, 2024
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  3. update changelog

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    ggabernet committed Aug 21, 2024
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  4. update changelog

    @ggabernet
    ggabernet committed Aug 21, 2024
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Commits on Aug 23, 2024

  1. parametrize clustersets

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    ggabernet committed Aug 23, 2024
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Commits on Aug 28, 2024

  1. update clustersets umi

    @ggabernet
    ggabernet committed Aug 28, 2024
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  2. update modules config

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    ggabernet committed Aug 28, 2024
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Commits on Aug 30, 2024

  1. remove vprimer and cprimer requirement for maskprimers_extract

    @ggabernet
    ggabernet committed Aug 30, 2024
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Commits on Sep 3, 2024

  1. do not stage log to results dir

    @ggabernet
    ggabernet committed Sep 3, 2024
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Commits on Sep 4, 2024

  1. makedb partial for mouse TR

    @ggabernet
    ggabernet committed Sep 4, 2024
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Commits on Sep 5, 2024

  1. improve TRUST4 docs

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    ggabernet committed Sep 5, 2024
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Commits on Sep 15, 2024

  1. fix maskprimers test noumi

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    ggabernet committed Sep 15, 2024
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  2. fix maskprimers sansumi

    @ggabernet
    ggabernet committed Sep 15, 2024
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  3. fix assemblepairs sansumi

    @ggabernet
    ggabernet committed Sep 15, 2024
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  4. maskprimers align sansumi

    @ggabernet
    ggabernet committed Sep 15, 2024
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Commits on Sep 16, 2024

  1. maskprimers sansumi assemble

    @ggabernet
    ggabernet committed Sep 16, 2024
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Commits on Sep 22, 2024

  1. fix suffix maskprimers algin

    @ggabernet
    ggabernet committed Sep 22, 2024
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  2. Merge branch 'clustersets' into dev

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    ggabernet committed Sep 22, 2024
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Commits on Sep 23, 2024

  1. fix log maskprimers align

    @ggabernet
    ggabernet committed Sep 23, 2024
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Commits on Sep 27, 2024

  1. implement maskprimers align umi

    @ggabernet
    ggabernet committed Sep 27, 2024
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  2. fix linting

    @ggabernet
    ggabernet committed Sep 27, 2024
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  3. fix ci workflow

    @ggabernet
    ggabernet committed Sep 27, 2024
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Commits on Oct 1, 2024

  1. fix parselogs merge df

    @ggabernet
    ggabernet committed Oct 1, 2024
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