style: Move prettier and editorconfig to pre-commit

#4554 (comment)

.github/workflows/lint.yml

@@ -38,38 +38,6 @@ jobs:
         with:
           extra_args: ""
 
-  prettier:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
-
-      - name: Install NodeJS
-        uses: actions/setup-node@1e60f620b9541d16bece96c5465dc8ee9832be0b # v4
-        with:
-          node-version: "20"
-
-      - name: Install Prettier
-        run: npm install -g prettier@3.1.0
-
-      - name: Run Prettier --check
-        run: prettier --check .
-
-  editorconfig:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
-
-      - uses: actions/setup-node@1e60f620b9541d16bece96c5465dc8ee9832be0b # v4
-        with:
-          node-version: "20"
-
-      - name: Install editorconfig-checker
-        run: npm install -g editorconfig-checker
-
-      - name: Run ECLint check
-        run: editorconfig-checker -exclude README.md $(git ls-files | grep -v test)
-
   ###################
   # nf-core linting #
   ###################

.pre-commit-config.yaml

@@ -29,3 +29,8 @@ repos:
         files: \.py$
         args: [--fix, --exit-non-zero-on-fix, "--select", "I,E1,E4,E7,E9,F,UP,N"] # sort imports and fix (rules taken from nf-core/tools)
       - id: ruff-format # formatter
+  - repo: https://github.com/editorconfig-checker/editorconfig-checker.python
+    rev: "" # pick a git hash / tag to point to
+    hooks:
+      - id: editorconfig-checker
+        alias: ec