FASTA4J

FASTA file format utils

Example

	long sequenceLength = FastaUtils.load()
									.fromGZIP(new File("/chr21.fa.gz"))
									.getSequence()
									.count();
	assertEquals(48129895, sequenceLength);

Maven Snapshots

<dependency>
  <groupId>org.omnaest.genomics</groupId>
  <artifactId>FASTA4J</artifactId>
  <version>0.0.1-SNAPSHOT</version>
</dependency>

<repositories>
    <repository>
        <id>ossrh</id>
        <url>https://oss.sonatype.org/content/repositories/snapshots</url>
        <snapshots>
            <enabled>true</enabled>
        </snapshots>
    </repository>
</repositories>