Develop #41
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Develop #41
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* udpate Readme and plugin gpg https://github.com/jodersky/sbt-gpg * downgrade gpg to 0.2.1. 0.2.2 not available ! * remove tagret directory fro repo * remove tagret directory fro repo * update Readme * fix jar publication * covered code for commands * update readme with badge * remove script * change galaxy recipe directory * remove temp file * minor fix for resume * add planemo test * add planemo test * add planemo test * add planemo test * add planemo test * planemo test only master/main/develop * lint planemo + conda test version * lint planemo + conda test version * lint planemo + conda test version * update fix meta.yml * remove conda recipe * clean repo * add sbt-release (#16) * Sbt release (#18) * add sbt-release * valid pom generation * Dockerfile (#20) * target directory for assembly * add dockerized task * add dockerfile * update gitignore * use directory docker * update docker management * fix outputdir assembly * update docker config * remove debug config * Dockerfile (#22) * target directory for assembly * add dockerized task * add dockerfile * update gitignore * use directory docker * update docker management * fix outputdir assembly * update docker config * remove debug config * remove coverage enable * fix dockerfile implementation to run process inside galaxy tools * Uplc tqd to isocor 24 (#26) * update Readme * add MassLynx parser / tests * replace strip with trim * increase coverage. manage bad line def inside array compound * fix coverage * fix coverage * add command/output object and tests * save notes * add galaxy config tools - gcms2isocor openlabcds2csv masslynx2isocor (#27) * add galaxy config tools - gcms2isocor openlabcds2csv masslynx2isocor * fix doc/name bin * downgrade profile galaxy version * fx test masslynx
* update circleci config with planemo conf * install planemo * fix option planemo * remove docker exemple from planemo test * add jar * decrease coverage mandatory * test artefacts * up * coverage * update with lint * update
* features: new method getNumberElementFromFormula to manage isotopic metabolites * save dev * update 0.1.8 * update galaxy tool masslynx2isocor * fix: repair/read formula from isocor Metabolites.dat. close #39 * update galaxy tool masslynx2isocor
Codecov Report
@@ Coverage Diff @@
## main #41 +/- ##
==========================================
- Coverage 97.58% 97.21% -0.38%
==========================================
Files 12 13 +1
Lines 290 323 +33
Branches 3 4 +1
==========================================
+ Hits 283 314 +31
- Misses 7 9 +2
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