Broken cython publish (#248)

* sets the github action to only publish sdist packages to pypi as the wheels are missing the compiled versions
* change paper building to only build the paper during a pull request to the paper branch
* adds `noexception` flags to cython code where needed

.github/workflows/draft-pdf.yml

@@ -1,6 +1,9 @@
 name: Build paper PDF
 
-on: [push]
+on:
+  pull_request:
+    branches:
+      - paper
 
 jobs:
   paper:

.github/workflows/python-publish.yml

@@ -9,9 +9,11 @@ jobs:
     name: ${{ matrix.os }} ${{ matrix.python-version }}
     strategy:
       matrix:
-        os: [ubuntu-latest, macOS-latest, windows-latest]
-        python-version: ['3.8', '3.9', '3.10', '3.11']
-        poetry-version: [1.2]
+        os: [ubuntu-latest]
+        python-version: ['3.11']
+#        os: [ubuntu-latest, macOS-latest, windows-latest]
+#        python-version: ['3.8', '3.9', '3.10', '3.11']
+        poetry-version: [1.6]
       fail-fast: false
     runs-on: ${{ matrix.os }}
 
@@ -27,5 +29,7 @@ jobs:
           poetry-version: ${{ matrix.poetry-version }}
       - name: Install package
         run: poetry install
-      - name: Build and publish package
-        run: poetry publish --build --skip-existing --username __token__ --password ${{ secrets.PYPI_API_TOKEN }}
+      - name: Build package
+        run: poetry build --format sdist
+      - name: Publish package
+        run: poetry publish --skip-existing --username __token__ --password ${{ secrets.PYPI_API_TOKEN }}

pyndl/ndl_parallel.pxd

@@ -8,19 +8,19 @@ from error_codes cimport ErrorCode
 
 cdef ErrorCode learn_inplace_binary_to_binary_ptr(char*, dtype_t, dtype_t, dtype_t, dtype_t,
                         dtype_t*, unsigned int, unsigned int*, unsigned int,
-                        unsigned int) nogil
+                        unsigned int) noexcept nogil
 
 
 cdef ErrorCode learn_inplace_binary_to_real_ptr(char*, dtype_t, dtype_t*,
                         dtype_t*, unsigned int, unsigned int, unsigned int,
-                        unsigned int) nogil
+                        unsigned int) noexcept nogil
 
 
 cdef ErrorCode learn_inplace_real_to_real_ptr(char*, dtype_t, dtype_t*,
                         dtype_t*, dtype_t*, unsigned int, unsigned int,
-                        unsigned int, unsigned int) nogil
+                        unsigned int, unsigned int) noexcept nogil
 
 
 cdef ErrorCode learn_inplace_real_to_binary_ptr(char*, dtype_t, dtype_t,
                         dtype_t, dtype_t*, dtype_t*, unsigned int, unsigned
-                        int, unsigned int) nogil
+                        int, unsigned int) noexcept nogil

pyndl/ndl_parallel.pyx

@@ -31,17 +31,17 @@ test_index += test_cue_index
 assert test_index == 18446744069414584320
 
 
-cdef inline void read_next_int(void *data, FILE *binary_file) nogil:
+cdef inline void read_next_int(void *data, FILE *binary_file) noexcept nogil:
     fread(data, 4, 1, binary_file) # little endian
 
 
 cdef extern from "stdio.h":
     #FILE * fopen ( const char * filename, const char * mode )
-    FILE *fopen(const char *, const char *) nogil
+    FILE *fopen(const char *, const char *) noexcept nogil
     #int fclose ( FILE * stream )
-    int fclose(FILE *) nogil
+    int fclose(FILE *) noexcept nogil
     #size_t fread ( void *ptr, size_t size, size_t count, FILE *stream );
-    size_t fread (void *, size_t, size_t, FILE *) nogil
+    size_t fread (void *, size_t, size_t, FILE *) noexcept nogil
 
 
 def learn_inplace_binary_to_binary(binary_file_paths,
@@ -78,7 +78,7 @@ def learn_inplace_binary_to_binary(binary_file_paths,
 
 
 
-cdef int is_element_of(unsigned int elem, unsigned int* arr, unsigned int size) nogil:
+cdef int is_element_of(unsigned int elem, unsigned int* arr, unsigned int size) noexcept nogil:
     cdef unsigned int ii
     for ii in range(size):
         if arr[ii] == elem:
@@ -94,7 +94,7 @@ cdef ErrorCode learn_inplace_binary_to_binary_ptr(char* binary_file_path,
                         unsigned int n_all_cues,
                         unsigned int* all_outcome_indices,
                         unsigned int start,
-                        unsigned int end) nogil:
+                        unsigned int end) noexcept nogil:
 
 
     cdef unsigned int number_of_events, number_of_cues, number_of_outcomes
@@ -178,7 +178,7 @@ cdef ErrorCode learn_inplace_binary_to_real_ptr(char* binary_file_path,
                         unsigned int n_all_cues,
                         unsigned int n_outcome_vector_dimensions,
                         unsigned int start,
-                        unsigned int end) nogil:
+                        unsigned int end) noexcept nogil:
 
 
     cdef unsigned int number_of_events, number_of_cues, number_of_outcomes
@@ -265,7 +265,7 @@ cdef ErrorCode learn_inplace_real_to_real_ptr(char* binary_file_path,
                         unsigned int n_cue_vector_dimensions,
                         unsigned int n_outcome_vector_dimensions,
                         unsigned int start,
-                        unsigned int end) nogil:
+                        unsigned int end) noexcept nogil:
 
     cdef unsigned int number_of_events, number_of_cues, number_of_outcomes
     cdef dtype_t association_strength, update, summed_cue_vector_value, summed_outcome_vector_value
@@ -376,7 +376,7 @@ cdef ErrorCode learn_inplace_real_to_binary_ptr(char* binary_file_path,
                         dtype_t* weights,
                         unsigned int n_cue_vector_dimensions,
                         unsigned int start,
-                        unsigned int end) nogil:
+                        unsigned int end) noexcept nogil:
 
     cdef unsigned int number_of_events, number_of_cues, number_of_outcomes
     cdef dtype_t association_strength, update, summed_cue_vector_value

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pyndl"
-version = "1.2.1"
+version = "1.2.2"
 description = "Naive discriminative learning implements learning and classification models based on the Rescorla-Wagner equations."
 
 license = "MIT"