added activeHRU_inactiveCELL and inactiveHRU_activeCELL arrays, merge… #311
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| name: gsflow continuous integration | |
| on: | |
| push: | |
| branches: [master, develop] | |
| pull_request: | |
| branches: [master, develop] | |
| jobs: | |
| pygsflowCI: | |
| name: autotests | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.8, "3.10"] | |
| run-type: [std] | |
| test-pth: ["./autotest"] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout pygsflow repo | |
| uses: actions/checkout@v2.3.4 | |
| - name: Get branch name | |
| uses: nelonoel/branch-name@v1.0.1 | |
| - name: Cache Miniconda | |
| uses: actions/cache@v2.1.0 | |
| env: | |
| # Increase this value to reset cache if environment.yml has changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-${{ matrix.python-version }}-${{ matrix.run-type }}-${{ env.CACHE_NUMBER }}-${{ hashFiles('etc/environment.yml') }} | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2.0.0 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| mamba-version: "*" | |
| channels: conda-forge | |
| auto-update-conda: true | |
| activate-environment: pygsflow | |
| use-only-tar-bz2: true | |
| - name: Add packages to pygsflow environment using mamba or conda | |
| shell: bash -l {0} | |
| run: | | |
| if [ "$RUNNER_OS" == "Windows" ]; then | |
| conda env update --name pygsflow --file etc/environment.yml | |
| else | |
| mamba env update --name pygsflow --file etc/environment.yml | |
| fi | |
| - name: Install pymake, flopy, and pygsflow | |
| shell: bash -l {0} | |
| run: | | |
| pip install https://github.com/modflowpy/pymake/zipball/master | |
| pip install https://github.com/modflowpy/flopy/zipball/develop | |
| pip install https://github.com/pygsflow/pygsflow/zipball/develop | |
| - name: Setup symbolic link to gfortran on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo ln -fs /usr/bin/gfortran-10 /usr/bin/gfortran | |
| sudo ln -fs /usr/bin/gcc-10 /usr/bin/gcc | |
| sudo ln -fs /usr/bin/g++-10 /usr/bin/g++ | |
| - name: Print GNU compiler versions | |
| run: | | |
| gfortran --version | |
| gcc --version | |
| g++ --version | |
| - name: Run nosetest CI testing suite for GSFLOW | |
| shell: bash -l {0} | |
| run: | | |
| cd autotest | |
| chmod u+x make_linux_gfortran.sh | |
| sed -i -e 's/\r$//' make_linux_gfortran.sh | |
| ./make_linux_gfortran.sh | |
| chmod a+x gsflow | |
| pip install pytest | |
| pytest -v | |