shiny-rnaseq-power

This is an R shiny app to run power analysis for RNA-Seq experiments.

Running the app

Run online

Click here to access an online instance of this app. This link may not always be active.

Run using docker

docker run --rm -p 3838:3838 royfrancis/shiny-rnaseq-power

The app should be available through a web browser at http://0.0.0.0:3838.

Run in R

Install the following R packages:

install.packages(c("BiocManager","shinyBS","pak"),repo="https://cloud.r-project.org/")
pak::pkg_install("rstudio/bslib")
BiocManager::install("RNASeqPower");

This repo is not an R package. Clone this repo and execute the R command shiny::runApp("app.R") in the root directory.

Acknowledgements

The underlying calculations are performed by the RNASeqPower R package.

Therneau T, Hart S, Kocher J (2021). Calculating samplesSize estimates for RNA Seq studies. R package version 1.32.0.

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2023 • Roy Francis