Example workflow to generate a trio VCF from parental data
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Updated
Jan 23, 2017 - Ruby
Example workflow to generate a trio VCF from parental data
A fork of the project Excavator2 from sourceforge.
This pipeline has moved! Please see:
The transplot package can be used to make multi-track plots of Next Generation Sequencing (NGS) data for gene transcripts, namely for depth of coverage and for the distribution of variants and protein domains.
Selects possible pathogenic variants from an Alamut output
colorectal cancer
Please consider using/contributing to https://github.com/nf-core/sarek
COverage Analysis Tool have been developed in 2016. It aims to automatically find bad quality regions of coding sequences in a set of sequencing data. It includes a graphical interface.
Note: This is a detailed Intro to this project. A brief users guide can be found at users_guide.md
As part of an overall strategy for improving therapies for childhood cancers, the PPTC seeks to develop models for the types of tumors that will be encountered in early phase clinical testing by establishing patient derived xenografts (PDXs) from high-risk childhood cancers refractory to current standard of care treatments. Genomic profiling of …
Miscellaneous pipelines for genomics computation analysis in a SGE HPC platform.
Scripts used on a cluster that demonstrate vcf file manipulation and preparation.
Scripts and data processing notes for Russian exome sequencing AF paper
All QC, annotation, and analyses for IBD exomes
Main Repository for my MASTER'S THESIS PROJECT
Analysis documentation for research into the variants associated with hyperparathyroidism. Illumina, germline, human, whole exome sequence (WES) data from the CCDHB.
Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data
Leveraging WES short reads for PAN-EXOME creation and analysis.
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