Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
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Updated
Oct 1, 2024 - Rust
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
strange pangenome and large graph visualization
Repository for the FantasticLamp pipeline
Analysis of shared parts of a pangenome
Library to parse, edit and handle in memory GFA graphs
ODGI: understanding pangenome graphs (https://doi.org/10.1093/bioinformatics/btac308)
Notes upon pangenome graphs construction
Alignment of Pangenome Graphs with Ricci Flow
Leveraging WES short reads for PAN-EXOME creation and analysis.
Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants
The lumpy skin disease virus (LSDV) pangenome variation graph (PVG)
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