Please consider using/contributing to https://github.com/nf-core/sarek
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Updated
Jan 3, 2019 - Nextflow
Please consider using/contributing to https://github.com/nf-core/sarek
Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data
This pipeline has moved! Please see:
Pipeline for Somatic Variant Calling with WES and WGS data
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
As part of an overall strategy for improving therapies for childhood cancers, the PPTC seeks to develop models for the types of tumors that will be encountered in early phase clinical testing by establishing patient derived xenografts (PDXs) from high-risk childhood cancers refractory to current standard of care treatments. Genomic profiling of …
A fork of the project Excavator2 from sourceforge.
colorectal cancer
Miscellaneous pipelines for genomics computation analysis in a SGE HPC platform.
Note: This is a detailed Intro to this project. A brief users guide can be found at users_guide.md
Selects possible pathogenic variants from an Alamut output
Leveraging WES short reads for PAN-EXOME creation and analysis.
COverage Analysis Tool have been developed in 2016. It aims to automatically find bad quality regions of coding sequences in a set of sequencing data. It includes a graphical interface.
Main Repository for my MASTER'S THESIS PROJECT
The transplot package can be used to make multi-track plots of Next Generation Sequencing (NGS) data for gene transcripts, namely for depth of coverage and for the distribution of variants and protein domains.
Scripts and data processing notes for Russian exome sequencing AF paper
Analysis documentation for research into the variants associated with hyperparathyroidism. Illumina, germline, human, whole exome sequence (WES) data from the CCDHB.
Scripts used on a cluster that demonstrate vcf file manipulation and preparation.
Reference Genome based Exon Phylogeny Pipeline
Add a description, image, and links to the exome-sequencing topic page so that developers can more easily learn about it.
To associate your repository with the exome-sequencing topic, visit your repo's landing page and select "manage topics."