ODGI: understanding pangenome graphs (https://doi.org/10.1093/bioinformatics/btac308)
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Updated
Apr 27, 2022 - TeX
ODGI: understanding pangenome graphs (https://doi.org/10.1093/bioinformatics/btac308)
Leveraging WES short reads for PAN-EXOME creation and analysis.
Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants
Notes upon pangenome graphs construction
The lumpy skin disease virus (LSDV) pangenome variation graph (PVG)
Analysis of shared parts of a pangenome
Alignment of Pangenome Graphs with Ricci Flow
strange pangenome and large graph visualization
Repository for the FantasticLamp pipeline
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
Library to parse, edit and handle in memory GFA graphs
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
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