Genomic VCF to tab-separated values
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Updated
Mar 9, 2023 - Python
Genomic VCF to tab-separated values
VarFish: comprehensive DNA variant analysis for diagnostics and research
Filter a VCF to discard false positive variants
A collection of software to work with genomic variants
Download public databases for VarFish
VarFish REST API client (CLI + Python package)
multi-anchors filtering and multi-threads implementation for vcf filtering
Simple REST API wrapper for CADD-scripts
VarFish (Snakemake) Client Workflow for Querying Snakemake
VarFish (Snakemake) Client Workflow for Validation
Repository for building IGSR data sets for use in VarFish
A WDL-based workflow for extraction of variants and their associated info from large VCF files
Re-implementation of the CADA phenotype-based prioritization algorithm
Mocking the CADD REST API server for VarFish development
Scripts for generating the data used in the VarFish course
Python wrapper and web-server for Ensembl VEP
pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data
Script and Docker container for VarFish installation and data download
Proof of concept client for clinical beacons API
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