Prerequisites

The scripts in this repository are designed to be run on a clean installation of the Spring 2015 edition of BCE:

• Spring 2015 (BCE-2015-spring.ova) (3.4GB)
  • (MD5 integrity checksum: 3d26353b7969ebcee6755529ae0751fc)

Read the self-paced installation instructions for details:

• http://bce.berkeley.edu/install.html

Installing system updates specific to PH290

The first time you run these instruction you will need to clone this repostory from GitHub to your BCE VM. Open a new Terminal in BCE and run these commands:

git clone https://github.com/ucberkeley/ph290-bce-2015-spring
cd ph290-bce-2015-spring
bash update-ph290-bce-2015-spring

To get further system updates you can follow this manual procedure:

cd ph290-bce-2015-spring
git pull
bash update-ph290-bce-2015-spring

Running the demo

The demo requires the IPython Notebook, RStudio, and several hundred libraries for processing and analysis installed-- that all comes with BCE so you don't have to install it yourself!

To set up the demo, simply type:

bash demo-setup-for-bce-workshop

And then run IPython Notebook or RStudio and open the corresponding folder in your home directory.