Apptainer Def File #86
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added 3 commits
January 17, 2024 10:40
Create a Apptainer Def file usage:
# Mount the DB's into the container
export APPTAINER_BIND="<local_path>:/opt/RoseTTAFold2NA/bfd,<local_path>:/opt/RoseTTAFold2NA/RNA,<local_path>:/opt/RoseTTAFold2NA/UniR>
# run rosetta2nafold
apptainer run --nv <container_name> <output_dir> <fa_filename> <type_RNA_DNA>
-Removed from run_RF2na.sh on both PATHS for WDIR and SCRIPT the "-s" param
- adden in RF2na-linux.yml the pytorch version 2.0 to avoid the NVTX error
- fixed a typo in make_rna_msa.sh
help
commit id changed :)
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Create a Apptainer Def file usage:
Mount the DB's into the container
-Removed from run_RF2na.sh on both PATHS for WDIR and SCRIPT the "-s" param