v112.0

1. ENCD-5719 fix breadcrumbs and treatments (#3716)
2. ENCD-5713-snovault update to 1.0.53 (#3708)
3. ENCD-5247-experiment- series-table-update (#3704)
4. ENCD-4179-batchdownload-link-on-dataset-pages (#3666)
5. ENCD-5673-add-scss-linter (#3684)
6. ENCD-4018-update-regulome-related-schema (#3706)
7. ENCD-5686-move-stimulation-to-purpose (#3695)
8. ENCD-5337 Fix downloaded graphs (#3699)
9. ENCD-5709-form-selects (#3705)
10. SNO-158-create-minimally-indexed-deploy (#3399)
11. ENCD-5606 update series searches (#3685)
12. ENCD-5674-allow-submission-of-library-with-mixed-biosamples (#3698)
13. ENCD-5700-add-index-reads-to-input-file-types-analysis-step (#3703)
14. ENCD-5691-add -element-enrichments-file-format-type (#3700)
15. ENCD-5678-update-frontend-documentation (#3689)
16. ENCD-5592-chia-pet-quality-metrics (#3696)
17. ENCD-5660-remove-antibody-NTR-audit-expt (#3687)
18. ENCD-5683-exp-series-hotfix (#3691)
19. ENCD-5694-fix-experiment-report-columns-for-cart-test (#3702)
20. ENCD-5684-fix-download-from-cart-report (#3692)
21. ENCD-5649 add series to nav (#3688)
22. ENCD-5661-upgrade-js-pkg (#3677)
23. ENCD-5593-move-install-to-setup (#3657)
24. ENCD-5655-page-editor-fix (#3690)
25. ENCD-5672-update-schema-columns-amount (#3682)
26. ENCD-5680 Pin setuptools version in circle-ci (#3686)

Release for encoded v111x0

v111.0

ENCD-5665-tie-eslint-to-circleci (#3671)
ENCD-5670-manual-slim-transcription-assays (#3681)
ENCD-5671-fix-stacked-buttons (#3679)
SNO-185-log-connection-error (#3659)
ENCD-5615-dataset-search (#3676)
ENCD-5647-add-capped-mRNA-to-nucleic-acid-term-name (#3655)
ENCD-5666-add-nanopore-signal-to-file-output-types (#3675)
ENCD-5667-update-ebs-volume-type (#3674)
ENCD-5663-login-dropdown-misaligned (#3673)
ENCD-5644-footprints-audit (#3672)
ENCD-5657-exclusion-list (#3660)
ENCD-5643-capture-targets-output-type (#3669)
ENCD-5664-juicebox-availability-fix (#3670)
ENCD-5653-signin-location-and-text-update (#3651)
ENCD-5623 add section breaks to glossary (#3668)
ENCD-5650-jan-2021-ontology-update (#3665)
ENCD-5518-change-navbar-color (#3661)
ENCD-5640-new-internal-tag-LRGASP (#3662)
ENCD-5543-add-series-page (#3647)
ENCD-5662-pseudoreplicated-peaks (#3663)
ENCD-5659-display-library-construction-method (#3667)
ENCD-5629-add-file-output-type-entries-to-glossary (#3627)
ENCD-5639-library-property-construction-method (#3654)
SNO-183-allow-specification-of-cart-in-search (#3650)
ENCD-5654-adjust-nic-audit-for-mapping-award (#3656)
ENCD-5607-warning-about-cart-title-private-info (#3638)
ENCD-5634-logged-out-carts (#3652)
ENCD-5586-make-donor-ethnicity-list-add-enums (#3645)
ENCD-5648-email-user-name-as-last-name-in-auth (#3648)
ENCD-4551-disable-visit-sharable-cart-during-cart-ops (#3646)
ENCD-5583-reorder-pipeline-on-experiment (#3642)
ENCD-5642-circleci-test-results (#3643)

Release for v110.0

ENCD-5645-pin-pip-version (#3644)
ENCD-5636-missing-processed-data-audit (#3639)
ENCD-5638-add-LRGASP-labs-to-alias-regex (#3640)
VALIS-26-enable-plotting-of-ENCD-bigbed-types (#3583)
ENCD-5631 Add audit for treatment series for mixed units (#3631)
ENCD-5595-avoid-inheriting-references-audits (#3637)
ENCD-5596-Valis-deploy-sprint-11-09-2020 (#3635)
ENCD-5356-add-examined-loci-on-FCC-experiments (#3624)
ENCD-5632 preserve coordinate on tab out (#3630)
ENCD-5573-unify-file-output-types (#3629)
ENCD-4525-cart-improvements (#3632)
ENCD-5600-add-Capture-Hi-C-and-snRNA-seq (#3626)
ENCD-5444 Rewrite the report page (#3616)
ENCD-5570-audit-outdated-analysis-update (#3633)
ENCD-5625-series-schema-pages-updates (#3625)
ENCD-5599-adjust-madqc-auditing-for-technical-replicates (#3617)
ENCD-5539 analysis set status (#3621)
ENCD-4660-hide-leave-modal-on-download (#3613)
ENCD-5619-fix-terser-circleci (#3622)
ENCD-5616-update-ckeditor (#3618)
ENCD-5566 fix cropped tooltips (#3588)
ENCD-5608-embed-Gene-in-examined-loci (#3614)

Release for encoded v109.0 (snovault 1.0.51)

109.0 (released) snovault 1.0.51

--------------------------------
1. update-snovault-1.0.51 (#3609)
2. ENCD-5562 add screen links (#3577)
3. SNO-174-add-local-storage-redis (#3599)
4. ENCD-5274-QC-report (#3605)
5. ENCD-5559 FCC processed data facet (#3584)
6. SNO-176-invalidate-object-when-unlinked (#3607)
7. ENCD-5590-add-starch-file-format (#3602)
8. ENCD-5579-dataset-search (#3597)
9. ENCD-5494-update-gene-annotations (#3514)
10. ENCD-5457-lower-audit-severity-RNA-frag-size-for-Bru (#3604)
11. ENCD-5584-file-output-types-gene-stabilities-preprocessed-alignments (#3600)
12. SNO-177-add-view-with-specified-fields (#3592)
13. ENCD-5589-allow-Genbank-reagents-in-GeneticModification-objects (#3606)
14. SNO-178-dont-print-to-logs-during-ES-test (#3608)
15. ENCD-5345-pipeline-prop-in-reference-fileset (#3593)
16. ENCD-5546-use-terms-remove-slims-ontology (#3595)
17. ENCD-5585-fix-views-with-no-at-type (#3594)
18. ENCD-5576-matrix-arrows (#3585)
19. ENCD-5567-analysis-supersedes (#3587)
20. ENCD-5554-add-audit-mixed-strand-specific-libraries (#3590)
21. ENCD-5571-display-location-Gene (#3596)
22. ENCD-5569-biosample-char-doc-details (#3589)
23. ENCD-4700-hide-checkbx-in-proceeded-data (#3586)

Release for encoded v108x0 (snovault 1.0.50)

1. ENCD-5534 Allow annotations and FCCs in carts (#3574)
2. ENCD-5574-update-snovault-version-1.0.50 (#3581)
3. ENCD-5572-Add-jesse-engreitz-to-aliases-name-space (#3579)
4. ENCD-5513-gm-doc-in-exp-page (#3568)
5. ENCD-5374 tooltip improvements (#3546)
6. ENCD-5531 adding h5ad file format (#3566)
7. SNO-168-stream-heterogeneous-uuids (#3548)
8. ENCD-5568-valis-deployment-09-28-2020 (#3576)
9. ENCD-5545 adding Gene Silencing Series (#3567)
10. ENCD-5347-show-strand-specificity (#3550)
11. ENCD-5515-ucsc-visualization-fcc-files (#3563)
12. ENCD-5555-Split-out-apache-indexer-config (#3561)
13. ENCD-5541-linkers-library-property (#3551)
14. ENCD-5551 Replace all instances of smoothed (#3565)
15. ENCD-5529-add-SOP-for-adding-new-assay (#3560)
16. ENCD-5550-fetch-origin-on-deploy (#3564)
17. ENCD-5492-remove-cloud-config-dir
18. ENCD-5491-remove-internal-deploy-docs
19. ENCD-5497 Add missing reqs for python osx
20. ENCD-5537 save browser position on sort (#3555)
21. ENCD-5547-add-FDR-cut-rate-and-footprints-UCSC-tracks (#3559)
22. ENCD-5487-tissue-organoid-expt-biosample-summary (#3538)
23. ENCD-5532-polyA-plus-RNA-seq-bug (#3557)
24. ENCD-5558-remove-redundant-analysis-file-audit (#3558)
25. ENCD-5526-gm-geneid (#3556)
26. ENCD-5542 Display average fragment size (#3547)
27. ENCD-5501 update gemBS alignment QC (#3549)
28. ENCD-5548 Remove duplicate line in DNase alignment quality metric changelog (#3544)
29. ENCD-4780-raw-seq-data-not-showing (#3541)
30. ENCD-5575-fce-bdd-test (#3582)

v107.0: 107.0 (released) snovault 1.0.49

1. ENCD-5538 fix mouse dev queries (#3539)
2. ENCD-4275-encore-matrix (#3543) (note: not ENCD-3078)
3. ENCD-5544-chip-matrix-remove-x-result-and-add-mint (#3542)
4. ENCD-5549-exclude-mixed-assembly-or-annotation-for-file-graph (#3545)
5. ENCD-5354-update-schema-replace-analyses-with-analysis-objects (#3536)
6. ENCD-5527-add-cut-and-tag-assay (#3524)
7. ENCD-5504 fourier transform min value (#3512)
8. ENCD-5488-add-valis-1-3-x-update (#3537)
9. ENCD-5442-improve-factorbook-integration (#3522)
10. ENCD-5536-empty-average-fragment-size-variable-compared-to-int (#3535)
11. ENCD-5530 Badges for all matrix pages (#3530)
12. ENCD-5524 use new life stage age property for mouse dev matrix (#3533)
13. ENCD-5514-fix-miRNA-experiment-audits-on-miRNA-quant-files (#3534)
14. ENCD-5499-new-output-types-for-Bru-WGBS-sc (#3532)
15. ENCD-5535-pipeline-arrows (#3531)
16. ENCD-5502-modENCODE-to-chip-matrix (#3511)
17. ENCD-5522-add-cutadapt-to-trimmingqm (#3525)
18. ENCD-5519-change-calculation-contributing-files (#3517)
19. ENCD-5498-allow-average-fragment-size-remove-small-RNA-title-calc (#3518)
20. ENCD-5468-IDR-thresholded-peaks-ATAC-audit (#3499)
21. ENCD-5377-generate-glossary-page-from-glossary-json (#3526)
22. ENCD-5523-life-stage-age-calc-property (#3521)
23. ENCD-5509 wgbs analysis step types update (#3515)
24. ENCD-5493-adjust-GM-schema-CRISPR (#3520)
25. ENCD-5507 RSC NSC values and audit (#3519)
26. ENCD-5344-fix-phone-issue-on-lab-update (#3508)
27. ENCD-5528-use-analysis-objects-to-draw-file-graph (#3523)
28. ENCD-5500-bdd-fixes (#3510)

Release for v106.1 hotfix UI bug

v106.1-hotfix

v106 hotfix - ENCD-5528

Release for encoded v106.0

106.0 (released) snovault 1.0.49

1. ENCD-5510-set-file-permissions-nagios (#3513)
2. ENCD-5512 Set type for cluster size in deploy (#3513)
3. update-snovault 1.0.49 (#3509)
4. ENCD-5462-qc-grouping (#3503)
5. SNO-166-update-query-string (#3475)
6. ENCD-5414 Update FCC menus (#3504)
7. ENCD-5469-switch-batch-download-mechanism (#3500)
8. ENCD-5495-cart-test (#3505)
9. ENCD-5464-sprite-ip (#3490)
10. ENCD-5437 Highlight file graph arrows (#3492)
11. ENCD-5451-add-nagios-monitor-deploy (#3498)
12. ENCD-5480-replace-stable-peaks-with-pseudo-replicated-peaks (#3485)
13. ENCD-5407-trans-enhancerpage (#3477)
14. ENCD-5473-update-biosample-characterization-audit (#3486)
15. ENCD-5334-add-analysis-step-audit (#3494)
16. ENCD-5467 Update Genetic Modification UI for new property (#3481)
17. ENCD-5463-make-target-import_items (#3480)
18. ENCD-5466-make-disease-term-id-name-list (#3482)
19. ENCD-5489-use-ramdisk-on-circleci (#3495)
20. ENCD-5459-transgenic-enhancer-expt-schema-changes (#3488)
21. ENCD-5481 Fix wrong audit detail (#3484)
22. ENCD-5471-lower-default-chunksize (#3476)
23. ENCD-5476-fix-indexing-tests (#3489)
24. ENCD-5472-as-file-form-submission (#3483)

Release for encoded v105x0 (snovault 1.0.48)

1. update-snovault-1.0.48 (#3474)
2. SNO-163-install-graphviz (#3460)
3. ENCD-5439-optimize-metadata-endpoint (#3462)
4. ENCD-5372-gm-delivery (#3465)
5. ENCD-5453-fix-missing-read-depth-audit (#3470)
6. ENCD-5447 dnase reference updates (#3473)
7. ENCD-5458-use-analysis-objects-for-file-graph (#3468)
8. ENCD-5431-add-bigInteract-to-file (#3466)
9. ENCD-5350-encode4-atac-qc-audits (#3469)
10. ENCD-5440-update-analysis-step-run-set-status (#3467)
11. ENCD-4957-view-control (#3463)
12. ENCD-5456-table-shift (#3464)
13. ENCD-5443-add-ng-to-biosample-starting-amount-units (#3459)
14. ENCD-5424-remove-assembly-for-gtf-files (#3461)
15. ENCD-5311-dnase-specific-alignment-quality-metric (#3396)
16. ENCD-5410 pseudo replicated peaks (#3457)
17. ENCD-5287-archived-file (#3455)
18. ENCD-5316-add-workflow-ID (#3458)
19. ENCD-5436-audit-idr-enc3-enc4 (#3454)
20. ENCD-5447 dnase reference file updates (#3451)
21. ENCD-5425-fix-tooltip-in-edge-and-ie (#3456)
22. ENCD-5445-fix-typos-experiment-audits (#3453)
23. ENCD-5423-modify-GM-reagents-regex (#3452)
24. ENCD-5416-misc-font-updates (#3450)
25. ENCD-5432-walkme-test (#3446)
26. ENCD-5062-add-image-icon-on-report-page (#3449)
27. ENCD-5433-refactor-not-bdd-not-indexing-tests (#3445)
28. ENCD-5418-adjust-fonts (#3444)

Release for encoded v104x0

Also includes v103 (unreleased)

104.0 (released) snovault 1.0.47

1.	Update snovault 1.0.47 (#3447)
2.	ENCD-5427-fix-title-underlines (#3442)
3.	ENCD-5415-audits-in-annotation-metadata (#3439)
4.	ENCD-5426-classic-img-update (#3441)
5.	ENCD-5386-reverse-link-publications-in-dataset.references (#3423)
6.	ENCD-5409-lower-chunksize-option-demo (#3437)
7.	ENCD-5420-fix-bottom-shading (#3440)
8.	ENCD-5421-annotation-test (#3436)
9.	ENCD-5403-annotation-meta-columns (#3433)
10.	SNO-159 Allow remote indexing (#3412)
11.	ENCD-5288-create-facet-for-cCREs (#3427)
12.	ENCD-5393-publication-dataset-download (#3435)
13.	ENCD-5404-add-mint-to-chip-audits (#3430)
14.	ENCD-5395-check-biosample-characterizations-from-pooled-from-biosample (#3421)
15.	ENCD-5398-add-cut-and-run-assay (#3425)
16.	ENCD-5400-analysis-update (#3426)
17.	ENCD-5371-biosample-disease-ontology (#3420)
18.	ENCD-5401-Restrict-batch-download-to-certain-types (#3432)
19.	ENCD-5394-cart-experiments-only (#3429)
20.	ENCD-5390 update fonts sitewide (#3418)
21.	ENCD-5413-hide-download-btn-for-large-search (#3431)
22.	ENCD-5382-update-robots-txt (#3424)
23.	ENCD-5405-cart-dl-metadata-url (#3422)
24.	ENCD-5385 facets updates (#3416)
25.	ENCD-5389-correct-audit-details-for-missing-input-control-audit (#3409)
26.	ENCD-5381-fix-publication-object-publication-year (#3414)
27.	ENCD-5367 clean up body map styles (#3407)
28.	ENCD-5290-homepage-update (#3413)
29.	ENCD-5378-fix-metadata-tsv-assay-col (#3411)
30.	ENCD-5252-add-index-reads-audit (#3391)
31.	ENCD-5359 add-hover-definitions-to-menu (#3401)
32.	ENCD-5391-fix-internal-status-facet-not-opening (#3410)
33.	ENCD-5304-major-ontology-update-scRNA-seq-assay-change (#3394)

103.0 (unreleased) snovault 1.0.46

1.	Update snovault 1.0.46 (#3406)
2.	SNO-160-use-boolean-values-in-facets (#3402)
3.	SNO-116-fix-summary-naming-conflict (#3404)
4.	ENCD-5241-search-scroll (#3367)
5.	ENCD-5370-add-pagination-to-publication-dataset (#3403)
6.	ENCD-5369-change-annotation-v5 (#3398)
7.	ENCD-5365-add-document-to-publication-obj (#3405)
8.	ENCD-5373 fix mouse development matrix (#3397)
9.	ENCD-5245-adjust-ChIP-control-audit (#3400)
10.	ENCD-5363-Fix-tags-on-cluster-deployments (#3381)
11.	ENCD-4519-in-series-change-relative-age-to-age (#3373)
12.	SNO-157-make-page-facets-collapsable (#3385)
13.	ENCD-5368-lib-dependency-depleted-nucleic-acid-term (#3395)
14.	ENCD-5193 additions to set_status_up for datasets (#3392)
15.	ENCD-4350-make-antibody-label-clearer (#3374)
16.	ENCD-5360-atac-output-types (#3389)
17.	ENCD-5358 fix body map thumbnail (#3390)
18.	ENCD-5286-subreads-bam-should-require-replicate (#3393)
19.	ENCD-5280-lower-audit-severity-missing-characterization (#3386)