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Siemens Csa headers #80
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I updated dcm2niix so if ProtocolName is not in the DICOM header it use the ProtocolName in the CSA header for the BIDS sidecar. This is a hail mary, and only influences the BIDS sidecar: the protocol name will still be empty with regards to the output filename (e.g. |
@neurolabusc - thanks. at this point we would probably have to make this change on our side inside our grouping function. but eventually we should consider where the metadata get extracted. |
@mgxd - can you add this as part of your refactor? |
* commit 'v1.0.20171017-3-g9ccc4c0': Detect SMS using 0051,1011 if MosaicRefAcqTimes missing rordenlab#141 Hide NIfTI sliceOrder if protocolSliceNumber1 > 1 SliceTiming for reversed image numbering https://github.com/neurolabusc/dcm2niix/issues/40 Update dcm_qa submodule. New version (v1.0.20171017) Added link rordenlab#138 Store mulbiband factor in NIfTI descrip field (e.g. "mb=2") https://www.nitrc.org/forum/message.php?msg_id=22593 Add patient sex, weight, etc, https://www.nitrc.org/forum/message.php?msg_id=22567 Add ImageOrientationPatientDICOM and InPlanePhaseEncodingDirectionDICOM for 3D undistortion Compiling with CentOS 7: rordenlab#137 BIDS 1.0.2 DelayTime field for sparse fMRI Add InstitutionalDepartmentName Get ProtocolName from CSA header if it is not in DICOM header nipy/heudiconv#80 Change name of output tag of two variables to match DICOM Group PixelBandwidth with DwellTime in output json Vanquish compiler warnings. Report lower order shims prior to higher order (requested by mharms) Handle Siemens product gradient offsets? More Siemens information saved to BIDS BIDS: Do not set multiband factor for 3D EPI, report as "MRAcquisitionType": "3D",
Hi, running heudiconv on Siemens (Avanto/Skyra/Prisma) data, I get:
Ignoring xxxx.IMA since not quite a «normal» DICOM: Dataset does not have attribute ‘ProtocolName’.
I guess this is caused by the attribute not being present at the normal location (0018 1030) in our Siemens DICOMS, but exists as tProtocolName in the private Csa header. Did I miss a switch when calling heudiconv, or does some logic need to be added? nibabel.nicom.csareader?
Cheers!
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