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neurodocker support for dcm2niix #138

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kaczmarj opened this issue Oct 16, 2017 · 0 comments
Closed

neurodocker support for dcm2niix #138

kaczmarj opened this issue Oct 16, 2017 · 0 comments

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@kaczmarj
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Hello,

I am the main developer of Neurodocker, a tool that generates custom Dockerfiles for neuroimaging. We now support building dcm2niix from source. Here's an example that generates a Dockerfile with dcm2niix master on debian stretch:

docker run --rm kaczmarj/neurodocker:master generate --base debian:stretch --pkg-manager apt --dcm2niix version=master

Thanks,
Jakub
neurolabusc added a commit that referenced this issue Oct 16, 2017
@neurolabusc
Added link #138
b759e86
yarikoptic added a commit to neurodebian/dcm2niix that referenced this issue Jan 24, 2018
@yarikoptic
Merge commit 'v1.0.20171017-3-g9ccc4c0' into debian
d164ee0 
* commit 'v1.0.20171017-3-g9ccc4c0':
  Detect SMS using 0051,1011 if MosaicRefAcqTimes missing rordenlab#141
  Hide NIfTI sliceOrder if protocolSliceNumber1 > 1
  SliceTiming for reversed image numbering https://github.com/neurolabusc/dcm2niix/issues/40
  Update dcm_qa submodule.
  New version (v1.0.20171017)
  Added link rordenlab#138
  Store mulbiband factor in NIfTI descrip field (e.g. "mb=2") https://www.nitrc.org/forum/message.php?msg_id=22593
  Add patient sex, weight, etc, https://www.nitrc.org/forum/message.php?msg_id=22567
  Add ImageOrientationPatientDICOM and InPlanePhaseEncodingDirectionDICOM for 3D undistortion
  Compiling with CentOS 7: rordenlab#137
  BIDS 1.0.2 DelayTime field for sparse fMRI
  Add InstitutionalDepartmentName
  Get ProtocolName from CSA header if it is not in DICOM header nipy/heudiconv#80
  Change name of output tag of two variables to match DICOM
  Group PixelBandwidth with DwellTime in output json
  Vanquish compiler warnings.
  Report lower order shims prior to higher order (requested by mharms)
  Handle Siemens product gradient offsets?
  More Siemens information saved to BIDS
  BIDS: Do not set multiband factor for 3D EPI, report as "MRAcquisitionType": "3D",
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@neurolabusc @kaczmarj