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0.1.7 MassLynx2Isocor #37

Merged
merged 5 commits into from
Apr 7, 2022
Merged

0.1.7 MassLynx2Isocor #37

merged 5 commits into from
Apr 7, 2022

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ofilangi
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@ofilangi ofilangi commented Apr 7, 2022

  • Fix confusion between Metabolite and Sample
  • Apply only on metabolite defined in the correspondance derivatives file

ofilangi and others added 5 commits April 1, 2022 14:14
* udpate Readme and plugin gpg https://github.com/jodersky/sbt-gpg

* downgrade gpg to 0.2.1. 0.2.2 not available !

* remove tagret directory fro repo

* remove tagret directory fro repo

* update Readme

* fix jar publication

* covered code for commands

* update readme with badge

* remove script

* change galaxy recipe directory

* remove temp file

* minor fix for resume

* add planemo test

* add planemo test

* add planemo test

* add planemo test

* add planemo test

* planemo test only master/main/develop

* lint planemo + conda test version

* lint planemo + conda test version

* lint planemo + conda test version

* update fix meta.yml

* remove conda recipe

* clean repo

* add sbt-release (#16)

* Sbt release (#18)

* add sbt-release

* valid pom generation

* Dockerfile (#20)

* target directory for assembly

* add dockerized task

* add dockerfile

* update gitignore

* use directory docker

* update docker management

* fix outputdir assembly

* update docker config

* remove debug config

* Dockerfile (#22)

* target directory for assembly

* add dockerized task

* add dockerfile

* update gitignore

* use directory docker

* update docker management

* fix outputdir assembly

* update docker config

* remove debug config

* remove coverage enable

* fix dockerfile implementation to run process inside galaxy tools

* Uplc tqd to isocor 24 (#26)

* update Readme

* add MassLynx parser / tests

* replace strip with trim

* increase coverage. manage bad line def inside array compound

* fix coverage

* fix coverage

* add command/output object and tests

* save notes

* add galaxy config tools - gcms2isocor openlabcds2csv masslynx2isocor (#27)

* add galaxy config tools - gcms2isocor openlabcds2csv masslynx2isocor

* fix doc/name bin

* downgrade profile galaxy version

* fx test masslynx
* fix

* save

* fix coverage

* fix typo. increase test precision

* increase limit coverage test to 97% !
@ofilangi ofilangi self-assigned this Apr 7, 2022
@ofilangi ofilangi merged commit ff1ab87 into main Apr 7, 2022
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