Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

0.1.7 MassLynx2Isocor #37

Merged
merged 5 commits into from
Apr 7, 2022
Merged

0.1.7 MassLynx2Isocor #37

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
a30b08a
Develop backup (#34)
ofilangi Apr 1, 2022
00e3683
inverse sample/metabolite in the input isocor file. (#35)
ofilangi Apr 1, 2022
2704540
fix (#36)
ofilangi Apr 7, 2022
6cb86cb
fix masslynx2isocor. 0.1.7
ofilangi Apr 7, 2022
45691ea
add 0.1.7 jar
ofilangi Apr 7, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions build.sbt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ scmInfo := Some(

versionScheme := Some("early-semver")

val static_version = "0.1.6"
val static_version = "0.1.7"
val version_build = scala.util.Properties.envOrElse("PROG_VERSION", static_version )

version := version_build
Expand All @@ -26,7 +26,7 @@ libraryDependencies += "com.github.scopt" %% "scopt" % "4.0.1"

// Coverage

coverageMinimumStmtTotal := 70
coverageMinimumStmtTotal := 98
coverageFailOnMinimum := false
coverageHighlighting := true

Expand Down
Binary file renamed ...slynx2isocor/P2M2Tools-assembly-0.1.6.jar → ...slynx2isocor/P2M2Tools-assembly-0.1.7.jar
View file
Open in desktop
Binary file not shown.
2 changes: 1 addition & 1 deletion galaxy/masslynx2isocor/masslynx2isocor.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<requirement type="package" version="8.0.121">openjdk</requirement>
</requirements>
<command detect_errors="exit_code"><![CDATA[
java -cp '$__tool_directory__/P2M2Tools-assembly-0.1.6.jar' fr.inrae.metabolomics.p2m2.command.MassLynx2IsocorCommand
java -cp '$__tool_directory__/P2M2Tools-assembly-0.1.7.jar' fr.inrae.metabolomics.p2m2.command.MassLynx2IsocorCommand
#for $input in $input_masslynx_files
#if $input
$input
Expand Down
27 changes: 26 additions & 1 deletion galaxy/masslynx2isocor/test-data/correspondence_derivatives.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1 +1,26 @@
GlyN15_A_1 AAAAA
His ACCQTAG
Asn ACCQTAG
SMCSO ACCQTAG
Ser ACCQTAG
Gln ACCQTAG
Arg ACCQTAG
Gly ACCQTAG
Asp ACCQTAG
Glu ACCQTAG
b-Ala ACCQTAG
Thr ACCQTAG
a-Ala ACCQTAG
GABA ACCQTAG
Pro ACCQTAG
SMC ACCQTAG
Orn 2ACCQTAG
Lys ACCQTAG
Tyr ACCQTAG
Met ACCQTAG
Val ACCQTAG
Ile ACCQTAG
Leu ACCQTAG
Phe ACCQTAG
Try ACCQTAG


Loading