An analysis and visualization platform for 'omics data
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Updated
Sep 30, 2024 - Python
An analysis and visualization platform for 'omics data
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
generating hardware accelerators for pangenomic graph queries
AMR/VF LGT focused bacterial genomics analysis workflow
Pangenome Analysis in Prokaryotes Lesson
Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
A nextflow pipeline to run the mummer pipelines (align genomes, call snps) and process outputs into sane formats.
Library to parse, edit and handle in memory GFA graphs
Pangenomics Workshop Overview
Analysis of shared parts of a pangenome
Topological data analysis for Comparative Genomics
This repo contains scripts used for the identification of phylogenetic marker genes (PMGs) in assembled metagenomic data. Code is provided for benchmarking this method on sequenced genomes as well as running this analysis on metagenomic data. These scripts are in development.
A nextflow pipeline to run the mummer pipelines (align genomes, call snps) and process outputs into sane formats.
Introduction to the Command Line for Pangenomics
Introduction to Python: Pangenomics
CPANG19 - Computational PANGenomics (2019)
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